View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_high_14 (Length: 386)
Name: NF12073_high_14
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Complemental strand, 36353929 - 36353567
Alignment:
| Q |
18 |
atataatatgatccatacaaaaatgcaattagttcatcattgtagatatgtgtttatacaatgtaaggtgatacccaattgaacattaatttgtagtgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36353929 |
atataatatgatccatacaaaaatgcaattagttcatcattgtagatatgtgtttatacaatgtaaggtgatacccaattgaacattaatttgtagtgag |
36353830 |
T |
|
| Q |
118 |
tcatgtcattctttaaacatgaatgtaataaactgatattgccattactttgtcacatgtttcagattgttgtaaggctttgaattcattgtacgtagga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36353829 |
tcatgtcattctttaaacatgaatgtaataaactgatattgccattactt-gtcacatgtttcagattgttgtaaggctttgaattcattgtacgtagga |
36353731 |
T |
|
| Q |
218 |
aactcttactgttatatatatgtaaacaaaaggtttacctattaatctcaataatacattttattaaaaagtctggtatatgtcttgtaagcacaactaa |
317 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36353730 |
aactcttactgttacatatatgtaaacaaaaggtttacctattaatctcaataatacattttattaaaaagtctggtatatgtcttgtaagcacaactaa |
36353631 |
T |
|
| Q |
318 |
attggtagctctgacgacaatattttataggagtcgatgttcgaaccgcagaccctttgcttct |
381 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||| ||||| |
|
|
| T |
36353630 |
attggtagctctaacgacaatattttgtaggagtcgatgttcgaaccacagaccctttacttct |
36353567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 291
Target Start/End: Complemental strand, 36346888 - 36346831
Alignment:
| Q |
233 |
atatatgtaaacaaaaggtttacctattaatctcaataatacattttattaaaaagtct |
291 |
Q |
| |
|
|||||||||| |||||||||||||||||| | ||||||||||| | ||||||||||||| |
|
|
| T |
36346888 |
atatatgtaagcaaaaggtttacctattattgtcaataataca-tatattaaaaagtct |
36346831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University