View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12073_high_15 (Length: 376)

Name: NF12073_high_15
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12073_high_15
NF12073_high_15
[»] chr2 (6 HSPs)
chr2 (18-177)||(15874358-15874517)
chr2 (182-259)||(15872515-15872592)
chr2 (18-68)||(15874551-15874601)
chr2 (22-104)||(31066099-31066181)
chr2 (17-104)||(19554197-19554283)
chr2 (328-362)||(15872412-15872446)
[»] scaffold0485 (1 HSPs)
scaffold0485 (18-104)||(5388-5473)
[»] chr3 (1 HSPs)
chr3 (18-104)||(5824356-5824442)
[»] chr5 (2 HSPs)
chr5 (21-102)||(24876980-24877061)
chr5 (22-105)||(21143105-21143188)
[»] chr4 (1 HSPs)
chr4 (22-103)||(25982840-25982921)


Alignment Details
Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 15874517 - 15874358
Alignment:
Q  18 gtgagagtatataagactaatagtagtcacaaattagggttatgaaatcatatggtaagtttacaaaataaaggctagagagagaatgagtttgaagaat 117  Q
    |||||||||||||||| || |||| |||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||    
T  15874517 gtgagagtatataagattagtagttgtcacaaattagggttatgaaatcatttggtaagtttacaaaatagagactagagagagaatgagtttgaagaat 15874418  T
Q  118 acattgatgttggagaacgaagacgtatcattgatttgagctttttaattctctggtggt 177  Q
    ||||||||||| ||||||||||||||||  |||| ||||||||||||||| ||| |||||    
T  15874417 acattgatgttagagaacgaagacgtattgttgagttgagctttttaattttctagtggt 15874358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 259
Target Start/End: Complemental strand, 15872592 - 15872515
Alignment:
Q  182 ttaatctctaaatgtttactttgttgtcatattaatctcttgttgtattaaaattgcaaatacatttacaaatatctc 259  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| || || ||||||    
T  15872592 ttaatctctaaatgttcactttgttgtcatattaatctcttgttgtattaaaattgcaaatacatctagaagtatctc 15872515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 15874601 - 15874551
Alignment:
Q  18 gtgagagtatataagactaatagtagtcacaaattagggttatgaaatcat 68  Q
    ||||||||||||||||||| |||| ||||||||||||||||||||||||||    
T  15874601 gtgagagtatataagactagtagttgtcacaaattagggttatgaaatcat 15874551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 31066181 - 31066099
Alignment:
Q  22 gagtatataagactaatagtagtcacaaattagggttatgaaatcatatggtaagtttacaaaataaaggctagagagagaat 104  Q
    ||||||||||||||| |||||||| |||| ||| | | ||||||||| |||||| ||||||||||| ||||||| ||||||||    
T  31066181 gagtatataagactagtagtagtcgcaaactagagctgtgaaatcatttggtaaatttacaaaatagaggctagcgagagaat 31066099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 19554197 - 19554283
Alignment:
Q  17 tgtgagagtatataagactaatagtagtcacaaattagggttatgaaatcatatggtaagtttacaaaataaaggctagagagagaat 104  Q
    ||||||||||| ||||| |  ||||||||||||||||||||| |||||| || |  |||||||||| |||| ||||||||||||||||    
T  19554197 tgtgagagtatttaagagtgttagtagtcacaaattagggttgtgaaattat-ttttaagtttacacaatagaggctagagagagaat 19554283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 362
Target Start/End: Complemental strand, 15872446 - 15872412
Alignment:
Q  328 ggaaatagggaaagggtttatgcatgtcaattatg 362  Q
    |||||||||||||||||||||||||||||||||||    
T  15872446 ggaaatagggaaagggtttatgcatgtcaattatg 15872412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 5473 - 5388
Alignment:
Q  18 gtgagagtatataagactaatagtagtcacaaattagggttatgaaatcatatggtaagtttacaaaataaaggctagagagagaat 104  Q
    ||||||||||||||||| | ||||||||||||||||||||| ||||||||| | ||||||||||||| || | ||||||||||||||    
T  5473 gtgagagtatataagacaagtagtagtcacaaattagggttgtgaaatcat-ttgtaagtttacaaattagaagctagagagagaat 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 5824442 - 5824356
Alignment:
Q  18 gtgagagtatataagactaatagtagtcacaaattagggttatgaaatcatatggtaagtttacaaaataaaggctagagagagaat 104  Q
    |||| |||||||||| ||| ||||||||||||| ||||||| |||||| || ||||| |||||||||||| ||||||||||||||||    
T  5824442 gtgaaagtatataagcctagtagtagtcacaaagtagggttgtgaaattatttggtaggtttacaaaatagaggctagagagagaat 5824356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 24876980 - 24877061
Alignment:
Q  21 agagtatataagactaatagtagtcacaaattagggttatgaaatcatatggtaagtttacaaaataaaggctagagagaga 102  Q
    |||||||||||||||| |||||||| |||| ||||||| ||||||||| ||  ||||||||||| |  ||||||||||||||    
T  24876980 agagtatataagactagtagtagtcccaaactagggttgtgaaatcatttgtcaagtttacaaattggaggctagagagaga 24877061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 105
Target Start/End: Original strand, 21143105 - 21143188
Alignment:
Q  22 gagtatataagactaatagtagtcacaaattagggttatgaaatcatatggtaagtttacaaaataaaggctagagagagaatg 105  Q
    ||||||||||||||| ||||||||||||| ||||||| ||||||||| ||  ||||||||| | || | | |||||||||||||    
T  21143105 gagtatataagactagtagtagtcacaaactagggttgtgaaatcatttgtgaagtttacacagtagatggtagagagagaatg 21143188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 103
Target Start/End: Original strand, 25982840 - 25982921
Alignment:
Q  22 gagtatataagactaatagtagtcacaaattagggttatgaaatcatatggtaagtttacaaaataaaggctagagagagaa 103  Q
    ||||||||||||||| ||  ||||||||| ||||||| ||||||||| || |||||||||||| |   ||||||||||||||    
T  25982840 gagtatataagactagtaagagtcacaaactagggttgtgaaatcatttgttaagtttacaaattggtggctagagagagaa 25982921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University