View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12073_high_16 (Length: 375)

Name: NF12073_high_16
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12073_high_16
NF12073_high_16
[»] chr7 (4 HSPs)
chr7 (110-355)||(5103679-5103919)
chr7 (15-100)||(5103519-5103604)
chr7 (118-229)||(29229675-29229786)
chr7 (120-168)||(34427570-34427618)
[»] chr2 (3 HSPs)
chr2 (113-226)||(30429090-30429202)
chr2 (166-230)||(9733541-9733605)
chr2 (106-147)||(9733551-9733592)
[»] chr5 (2 HSPs)
chr5 (120-226)||(16829208-16829313)
chr5 (123-219)||(35463965-35464061)
[»] chr4 (4 HSPs)
chr4 (113-225)||(7277438-7277550)
chr4 (118-178)||(21861077-21861137)
chr4 (118-178)||(21916940-21917000)
chr4 (119-219)||(10304669-10304769)
[»] chr1 (3 HSPs)
chr1 (113-230)||(8174117-8174234)
chr1 (124-229)||(29853196-29853301)
chr1 (113-192)||(47154689-47154768)
[»] chr6 (1 HSPs)
chr6 (162-240)||(674121-674199)
[»] chr3 (6 HSPs)
chr3 (106-192)||(11534795-11534881)
chr3 (160-226)||(26331223-26331289)
chr3 (113-230)||(26331239-26331355)
chr3 (162-229)||(55121176-55121243)
chr3 (106-147)||(55121188-55121229)
chr3 (172-224)||(25108987-25109039)
[»] chr8 (2 HSPs)
chr8 (106-147)||(24259068-24259109)
chr8 (160-236)||(38779301-38779376)


Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 110 - 355
Target Start/End: Original strand, 5103679 - 5103919
Alignment:
Q  110 aagaaaacacaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgttttt 209  Q
    ||||||| | || ||||| ||||||||||||||||||| ||||| || |||||||||||||||||||||| ||||||||||||||   ||| ||||||||    
T  5103679 aagaaaaaataacttttttggttcattcaataactaatgtctctaacatttatatagaccagatacattgattattcgatgaaca---aaagttgttttt 5103775  T
Q  210 gtcttataaacgtgaccggagaaaatatatatgtgtatcgtgaggcattaatatttgactgctggtcgaggatacataaatgagttgaccataatttgat 309  Q
    |||||||||| |||| ||||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5103776 gtcttataaatgtgatcggaggaaatat--atgtgtatcgtgagggattaatatttgactgctggtcgaggatacataaatgagttgaccataatttgat 5103873  T
Q  310 agaatgatcatgcaaaggttaatcttgttgtatatgttcttaattt 355  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  5103874 agaatgatcatgcaaacgttaatcttgttgtatatgttcttaattt 5103919  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 100
Target Start/End: Original strand, 5103519 - 5103604
Alignment:
Q  15 atgaagacggaataatagagagagaaaaacaaaattagtttctaattccatcgttaattaaatgttagagacggcaaatttatgga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5103519 atgaagacggaataatagagagagaaaaacaaaattagtttctaattccttcgttaattaaatgttagagacggcaaatttatgga 5103604  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 29229786 - 29229675
Alignment:
Q  118 acaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttata 217  Q
    |||| |||||||||||||| |||||||||| | |||||||| ||||||||||| || |||| ||| ||  |||||  |||||| ||||||||  ||||||    
T  29229786 acaactttttaggttcattgaataactaatgtatctgacctatatatagaccaaatgcattagttgtttaatgaatctaaaaagttgttttttgcttata 29229687  T
Q  218 aacgtgaccgga 229  Q
     | |||||||||    
T  29229686 tatgtgaccgga 29229675  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 34427618 - 34427570
Alignment:
Q  120 aattttttaggttcattcaataactaatttctctgacctttatatagac 168  Q
    ||||||||| |||||||||||||||||| | |||||||| |||||||||    
T  34427618 aattttttaagttcattcaataactaatatatctgacctatatatagac 34427570  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 30429090 - 30429202
Alignment:
Q  113 aaaacacaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtc 212  Q
    |||| |||| |||||||||||||||||||| |||| | |||||||||||||||||| ||||||||| ||||||| || ||| |||| |||| |||||| |    
T  30429090 aaaaaacaactttttaggttcattcaataattaatgtatctgacctttatatagactagatacattagttattcaataaacctaaacaattttttttg-c 30429188  T
Q  213 ttataaacgtgacc 226  Q
    ||||||| ||||||    
T  30429189 ttataaatgtgacc 30429202  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 166 - 230
Target Start/End: Original strand, 9733541 - 9733605
Alignment:
Q  166 gaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataaacgtgaccggag 230  Q
    |||| |||||||| ||||||| |||||| |||||||||||||||   ||||||| ||||||||||    
T  9733541 gaccggatacattagttattcaatgaacctaaaaaattgttttttgtttataaatgtgaccggag 9733605  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Complemental strand, 9733592 - 9733551
Alignment:
Q  106 tataaagaaaacacaattttttaggttcattcaataactaat 147  Q
    |||||| |||| ||||||||||||||||||| ||||||||||    
T  9733592 tataaacaaaaaacaattttttaggttcattgaataactaat 9733551  T

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Target: chr5 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 120 - 226
Target Start/End: Complemental strand, 16829313 - 16829208
Alignment:
Q  120 aattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataaa 219  Q
    ||||||||||||||||  |||||||||| | ||||||||||||||| || ||||||||| | ||||| |||||| |||||| || |||||| ||||||||    
T  16829313 aattttttaggttcatcgaataactaatgtatctgacctttatataaactagatacattagatattcaatgaacttaaaaagttatttttg-cttataaa 16829215  T
Q  220 cgtgacc 226  Q
     ||||||    
T  16829214 tgtgacc 16829208  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 35464061 - 35463965
Alignment:
Q  123 tttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataaa 219  Q
    ||||||||||| || | || ||||| | ||| || | |||||||||| |||||||| ||||||| |||||| ||||||||| |||||  ||||||||    
T  35464061 tttttaggttctttgagtagctaatgtatctaacatatatatagaccggatacattagttattcaatgaacctaaaaaattattttttgcttataaa 35463965  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 7277438 - 7277550
Alignment:
Q  113 aaaacacaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtc 212  Q
    |||| |||| |||||||||||||| |||||||||| | |||||| |||||||||| |||||||||  ||||||| || ||| |||||| | ||||||  |    
T  7277438 aaaaaacaactttttaggttcattgaataactaatgtatctgacttttatatagatcagatacatgagttattcaataaacttaaaaagtcgtttttcgc 7277537  T
Q  213 ttataaacgtgac 225  Q
    ||||||| |||||    
T  7277538 ttataaatgtgac 7277550  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 21861077 - 21861137
Alignment:
Q  118 acaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacatt 178  Q
    |||||||||||| | |||| ||||| |||| | |||||| |||||||||||||||||||||    
T  21861077 acaattttttagatacattgaataattaatgtatctgacttttatatagaccagatacatt 21861137  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 178
Target Start/End: Original strand, 21916940 - 21917000
Alignment:
Q  118 acaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacatt 178  Q
    |||||||||||| | |||| ||||| |||| | |||||| |||||||||||||||||||||    
T  21916940 acaattttttagatacattgaataattaatgtatctgacttttatatagaccagatacatt 21917000  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 10304769 - 10304669
Alignment:
Q  119 caattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataa 218  Q
    ||||||||||  |||||| |||||||||| | | |||||  |||||||||| | | |||||||||||  |||||||| |||| || |||||  |||||||    
T  10304769 caattttttaaattcattaaataactaatgtatatgaccgatatatagaccggcttcattggttatttaatgaacatgaaaagttattttttgcttataa 10304670  T
Q  219 a 219  Q
    |    
T  10304669 a 10304669  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 8174117 - 8174234
Alignment:
Q  113 aaaacacaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtc 212  Q
    |||| ||||||||||||||||||| |||| ||| | | || ||  |||||||||||||||||||||  | |||| ||||| ||||||| |||| |||  |    
T  8174117 aaaaaacaattttttaggttcattgaatatctattgtatccgatttttatatagaccagatacattaatcattcaatgaatataaaaagttgtgttttgc 8174216  T
Q  213 ttataaacgtgaccggag 230  Q
    ||||||| ||||||||||    
T  8174217 ttataaatgtgaccggag 8174234  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 29853196 - 29853301
Alignment:
Q  124 ttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataaacgtg 223  Q
    |||||||||||||||||||||||| | |||||| | |||||||| |  |||||||  |||||  ||||||||||||| ||  ||||  ||||||||  ||    
T  29853196 ttttaggttcattcaataactaatgtatctgacttatatatagatcgaatacattatttattaaatgaacataaaaagttaatttttacttataaatatg 29853295  T
Q  224 accgga 229  Q
    ||||||    
T  29853296 accgga 29853301  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 192
Target Start/End: Complemental strand, 47154768 - 47154689
Alignment:
Q  113 aaaacacaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaa 192  Q
    |||| |||| |||||||||||||| ||||| |||| | |||| ||| |||||||||  |||||| ||||||||| |||||    
T  47154768 aaaaaacaactttttaggttcatttaataaataatgtatctggcctatatatagactggatacagtggttattcaatgaa 47154689  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 674121 - 674199
Alignment:
Q  162 tatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataaacgtgaccggagaaaatatata 240  Q
    ||||||||| ||| ||| ||||||| |||||  |||||||||||||||  |||||||| ||||||||||||| ||||||    
T  674121 tatagaccaaatatattagttattcaatgaatctaaaaaattgttttttgcttataaatgtgaccggagaaagtatata 674199  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 192
Target Start/End: Complemental strand, 11534881 - 11534795
Alignment:
Q  106 tataaagaaaacacaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaa 192  Q
    |||||| |||| |||||||||||| |||||| ||||  |||| | |||||||| ||||||||||| ||||||| | ||||| |||||    
T  11534881 tataaacaaaatacaattttttagattcattgaatatttaatgtatctgacctatatatagaccatatacattaggtattcaatgaa 11534795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 26331289 - 26331223
Alignment:
Q  160 tatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataaacgtgacc 226  Q
    ||||||||||||||||||| || |||| |||||| || ||||||||||||  |||||||| ||||||    
T  26331289 tatatagaccagatacattagtcattcaatgaacctagaaaattgttttttgcttataaatgtgacc 26331223  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 26331239 - 26331355
Alignment:
Q  113 aaaacacaattttttaggttcattcaataactaatttctctgacctttatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtc 212  Q
    |||| |||||||| |||||||||| ||| |||||| | ||||  || ||||||||||| | ||||| ||  ||| |||||| |||||| ||||||||  |    
T  26331239 aaaaaacaattttctaggttcattgaatgactaatgtatctggtctatatatagacca-aaacattagtctttcaatgaacctaaaaagttgttttttgc 26331337  T
Q  213 ttataaacgtgaccggag 230  Q
    ||||||| ||||||||||    
T  26331338 ttataaatgtgaccggag 26331355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 162 - 229
Target Start/End: Complemental strand, 55121243 - 55121176
Alignment:
Q  162 tatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataaacgtgaccgga 229  Q
    |||| |||| ||||||| ||||||| |||||| |||||||||||||||   ||||||| |||||||||    
T  55121243 tataaaccaaatacattagttattcaatgaacctaaaaaattgttttttgtttataaatgtgaccgga 55121176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 55121188 - 55121229
Alignment:
Q  106 tataaagaaaacacaattttttaggttcattcaataactaat 147  Q
    |||||| |||| ||||||||||||||||||| ||||||||||    
T  55121188 tataaacaaaaaacaattttttaggttcattgaataactaat 55121229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 224
Target Start/End: Original strand, 25108987 - 25109039
Alignment:
Q  172 atacattggttattcgatgaacataaaaaattgtttttgtcttataaacgtga 224  Q
    ||||||| ||||||| |||||||||||||||| |||||  |||||||| ||||    
T  25108987 atacattagttattcaatgaacataaaaaattattttttacttataaatgtga 25109039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 24259068 - 24259109
Alignment:
Q  106 tataaagaaaacacaattttttaggttcattcaataactaat 147  Q
    ||||| ||||| |||||||||||| |||||||||||||||||    
T  24259068 tataaggaaaatacaattttttagattcattcaataactaat 24259109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 38779301 - 38779376
Alignment:
Q  160 tatatagaccagatacattggttattcgatgaacataaaaaattgtttttgtcttataaacgtgaccggagaaaata 236  Q
    |||||| || |||||||||  |||||  || ||| ||||||||||||||| ||||||||| || |||||||||||||    
T  38779301 tatataaactagatacattaattatttaataaacttaaaaaattgttttt-tcttataaatgtaaccggagaaaata 38779376  T

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