View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_high_18 (Length: 371)
Name: NF12073_high_18
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 6490268 - 6490624
Alignment:
| Q |
1 |
taacactattaaggatacacataagtgtttcaatgattgttcagattacatgcttgagaagattgctaatggtcctggtggagttgttcttgcaactcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6490268 |
taacactattaaggatacacataagtgtttcaatgattgttcagattacatgcttgagaagattgctaatggtcctggtggagttgttcttgcaactcat |
6490367 |
T |
|
| Q |
101 |
aacattgaatcaggtatatattatatgatattatgatgataaggaaattgatatatgcaattgaggggtatgagtttga-tttaatttaattaatgttgt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||| || ||| ||| |||||||||||||||| |
|
|
| T |
6490368 |
aacattgaatcaggtatatattatatgatattatgatgataaggaaattaatgtatgcaattgaggggtatg-gtatgagtttgatttaattaatgttgt |
6490466 |
T |
|
| Q |
200 |
tttttgtataggaaaattggctgctgcaaaagcacatgaattagggattggaaaggtgaaccataagatggaatttgcacaactatatggaatgtctgag |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6490467 |
tttttgtataggaaaattggctgctgcaaaagcacatgaattagggattggaaaggtgaaccataagatggaatttgcacaactatatggaatgtctgag |
6490566 |
T |
|
| Q |
300 |
gcactatcctttgctttgagcaatgcagggtttcaagttagcaagtacatgccatttg |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6490567 |
gcactatcctttgctttgagcaatgcagggtttcaagttagcaagtacatgccatttg |
6490624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 357
Target Start/End: Complemental strand, 6347786 - 6347632
Alignment:
| Q |
203 |
ttgtataggaaaattggctgctgcaaaagcacatgaattagggattggaaaggtgaaccataagatggaatttgcacaactatatggaatgtctgaggca |
302 |
Q |
| |
|
|||| |||| |||||||| || ||||||||| ||||| | ||||||||||| |||||||||||| | |||||||||||||||| ||||||||| || ||| |
|
|
| T |
6347786 |
ttgtgtagggaaattggcagcagcaaaagcatatgaaattgggattggaaaagtgaaccataagcttgaatttgcacaactatgtggaatgtcagatgca |
6347687 |
T |
|
| Q |
303 |
ctatcctttgctttgagcaatgcagggtttcaagttagcaagtacatgccatttg |
357 |
Q |
| |
|
|| || |||| ||||||||| || || ||| ||| |||||||| |||||||||| |
|
|
| T |
6347686 |
ctttcatttggtttgagcaaagctggatttagagtaagcaagtatatgccatttg |
6347632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 357
Target Start/End: Complemental strand, 6325563 - 6325414
Alignment:
| Q |
208 |
taggaaaattggctgctgcaaaagcacatgaattagggattggaaaggtgaaccataagatggaatttgcacaactatatggaatgtctgaggcactatc |
307 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||| | ||||| ||||||||||| || ||| | |||||||||||||||| ||||||||| || ||||| || |
|
|
| T |
6325563 |
tagggaaattggctgcagcaaaagcatatgaaattgggatgggaaaggtgaatcacaagcttgaatttgcacaactatgtggaatgtcagatgcactttc |
6325464 |
T |
|
| Q |
308 |
ctttgctttgagcaatgcagggtttcaagttagcaagtacatgccatttg |
357 |
Q |
| |
|
|||| ||||||||| || || ||| ||| |||||||| |||||||||| |
|
|
| T |
6325463 |
atttggtttgagcaacgctggatttagagtaagcaagtatatgccatttg |
6325414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 208 - 357
Target Start/End: Complemental strand, 6332519 - 6332370
Alignment:
| Q |
208 |
taggaaaattggctgctgcaaaagcacatgaattagggattggaaaggtgaaccataagatggaatttgcacaactatatggaatgtctgaggcactatc |
307 |
Q |
| |
|
|||| ||||||||||| ||||||||| ||||| | ||||| ||||||||||| || ||| | |||||||||||||||| ||||||||| || ||||| || |
|
|
| T |
6332519 |
tagggaaattggctgcagcaaaagcatatgaaattgggatgggaaaggtgaatcacaagcttgaatttgcacaactatgtggaatgtcagatgcactttc |
6332420 |
T |
|
| Q |
308 |
ctttgctttgagcaatgcagggtttcaagttagcaagtacatgccatttg |
357 |
Q |
| |
|
|||| ||||||||| || || ||| ||| |||||||| |||||||||| |
|
|
| T |
6332419 |
atttggtttgagcaacgctggatttagagtaagcaagtatatgccatttg |
6332370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 6348418 - 6348351
Alignment:
| Q |
5 |
actattaaggatacacataagtgtttcaatgattgttcagattacatgcttgagaagattgctaatgg |
72 |
Q |
| |
|
|||||||| ||||||||||| || ||||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
6348418 |
actattaaagatacacataattgcttcaatgattgttcatcttatttgcttgagaagtttgctaatgg |
6348351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 6326182 - 6326115
Alignment:
| Q |
5 |
actattaaggatacacataagtgtttcaatgattgttcagattacatgcttgagaagattgctaatgg |
72 |
Q |
| |
|
|||||| | ||||||||||| || ||||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
6326182 |
actattgaagatacacataattgcttcaatgattgttcatcttatttgcttgagaagtttgctaatgg |
6326115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 6333138 - 6333071
Alignment:
| Q |
5 |
actattaaggatacacataagtgtttcaatgattgttcagattacatgcttgagaagattgctaatgg |
72 |
Q |
| |
|
|||||| | ||||||||||| || ||||||||||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
6333138 |
actattgaagatacacataattgcttcaatgattgttcatcttatttgcttgagaagtttgctaatgg |
6333071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University