View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_high_21 (Length: 312)
Name: NF12073_high_21
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_21 |
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| [»] scaffold0425 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 8455534 - 8455241
Alignment:
| Q |
1 |
agaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8455534 |
agaccaactattagatgagatttctactgatgcaatgctaaataacctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagct |
8455435 |
T |
|
| Q |
101 |
ttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtcctt |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||| ||||| |||||||||||||||||| |
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| T |
8455434 |
ttatctagaaatccatttgaatctaggctcaatgaacaactggataaactagaatttcttgcaaagaaaaggaaagagttgagattgggagaaggtcctt |
8455335 |
T |
|
| Q |
201 |
gtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgt |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8455334 |
gtgctaggaatgaaggcttagtcagttggaaaccttcaaaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtcgagatgt |
8455241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 8590609 - 8590316
Alignment:
| Q |
1 |
agaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||| || ||||||||||||| ||||||||||| |
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| T |
8590609 |
agaccaactattagatgagatttctactgatgcaatgctaaataagctgaaagctaaatctgaaccacttagcagcaatttattgggcttggtttcagct |
8590510 |
T |
|
| Q |
101 |
ttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtcctt |
200 |
Q |
| |
|
||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8590509 |
ttaactacaaatccatttgaaaccaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccct |
8590410 |
T |
|
| Q |
201 |
gtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgt |
294 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
8590409 |
gtgctagtaacgaaggcttagtcagttggaaaccttcaaaaaggttgtcatctacagctcttgtggatgagtcgagcatatatggtagagatgt |
8590316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 6736870 - 6736578
Alignment:
| Q |
1 |
agaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagct |
100 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6736870 |
agaccaactattggatgagatttctactgatgcaatgctaaataaggtgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagct |
6736771 |
T |
|
| Q |
101 |
ttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtcctt |
200 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
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| T |
6736770 |
ttaactacaaatccatttgaatgtaggctcaatgaacagctcgataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtccta |
6736671 |
T |
|
| Q |
201 |
gtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatg |
293 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
6736670 |
gtgctagtaatgaaggcttagtcagttggaaaccttcaaaaaggttgtcatctacagctctcctggatgagtcaagcatatatggtagagatg |
6736578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 6948149 - 6947857
Alignment:
| Q |
1 |
agaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagct |
100 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6948149 |
agaccaactgttagatgagatttctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagct |
6948050 |
T |
|
| Q |
101 |
ttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtcctt |
200 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||| || |||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| |
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| T |
6948049 |
ttaactacaaatccatttgaatgtaggctcaatgaacagctcgataaactagaacttcttgcaaagaaaaagaaagagttgggattgggagaaagtcctt |
6947950 |
T |
|
| Q |
201 |
gtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatg |
293 |
Q |
| |
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| ||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||| |||||||||| | ||||||||||||||||| |
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| T |
6947949 |
gcgctagtaatgaaggcttagtcagttggaaaccttcaaaaagattgtcatctacagctctcatggatgagtcaaccatatatggtagagatg |
6947857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6553587 - 6553880
Alignment:
| Q |
1 |
agaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| | ||||||||| |
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|
| T |
6553587 |
agaccaactattagatgagatttctactgatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttcgtttcagct |
6553686 |
T |
|
| Q |
101 |
ttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtcctt |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
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|
| T |
6553687 |
ttaactacaaatccatttgaatgtaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtccta |
6553786 |
T |
|
| Q |
201 |
gtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgt |
294 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
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|
| T |
6553787 |
gtgctagtaatgaaggcttagtcagttggaaaccttcaaaaaggttgtcgtctacagctctcgtggatgagtcaagcatatatggtagggatgt |
6553880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6479131 - 6479424
Alignment:
| Q |
1 |
agaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagct |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
6479131 |
agaccaactattagatgagatatctactgatgcaatgctaaataagctgaaagctgaatctgaaccacttaccaccaatttattgggcgtggtttcagct |
6479230 |
T |
|
| Q |
101 |
ttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtcctt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| | ||||||||||| ||||||||| |
|
|
| T |
6479231 |
ttaactacaaatccatttgaatctaggctcaatgaacaactggataaactagaatttcttgcaatgcaaaagtaggtgttgggattggcagaaggtccca |
6479330 |
T |
|
| Q |
201 |
gtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgt |
294 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
6479331 |
gtgctagtaatgaaggcttagtcagttggaaaccttcaaaaagattgtcatctacggctctcgtggatgagtccagcatatatggcagagatgt |
6479424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6519311 - 6519604
Alignment:
| Q |
1 |
agaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| || |||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
6519311 |
agaccaactattagatgagatttctactgatgcaatgatatataagttgaaagctgaatctgaaccacttaccaccaatttatttggctgggtttcagct |
6519410 |
T |
|
| Q |
101 |
ttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtcctt |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| |||||| | ||||||| ||||||| | |||| ||||| | ||||||||| || ||||||| |
|
|
| T |
6519411 |
ttaactggaaatccatttgaatctaggctcaataaactactggagacactagaatctcttgcacaacaaacgaaaaggctgggattggaagttggtcctt |
6519510 |
T |
|
| Q |
201 |
gtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgt |
294 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| || | |||||||||||| |||| ||||||||||| ||| ||| |||||||||||| |
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|
| T |
6519511 |
gtgctagtaatgaaggcttagtcagttggaaaccttcaaaacgattgtcatctacatctcttgtggatgagtcaagcttatgtggtagagatgt |
6519604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 5250798 - 5250757
Alignment:
| Q |
252 |
ctacagctctcgtggatgagtcgagcatatatggtagagatg |
293 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||| |
|
|
| T |
5250798 |
ctacagctttggtggatgaatcgagcatatatggtagagatg |
5250757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 6626 - 6919
Alignment:
| Q |
1 |
agaccaactattagatgagatttctaccgatgcaatgctaaataatctgaaagctgaatctgaaccacttaccaccaatttattgggcatggtttcagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6626 |
agaccaactattagatgagatttctactgatgcaatgataaataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttggtttcagct |
6725 |
T |
|
| Q |
101 |
ttaactagaaatccatttgaatctaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtcctt |
200 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||| |
|
|
| T |
6726 |
ttaactacaaatccatttgaatgtaggctcaatgaacaactggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtccta |
6825 |
T |
|
| Q |
201 |
gtgctaggaatgaaggcttagtcagttggaaaccttcacaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgt |
294 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
6826 |
gtgctagtaatgaaggcttagtcagttggaaaccttcaaaaaggttgtcatctacagctctcgtggatgagtcaagcatatatggtagggatgt |
6919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 160 - 224
Target Start/End: Original strand, 41068553 - 41068617
Alignment:
| Q |
160 |
tgcaaagcaaaagaaaaagttgggattgggagaaggtccttgtgctaggaatgaaggcttagtca |
224 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
41068553 |
tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca |
41068617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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