View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_high_23 (Length: 300)
Name: NF12073_high_23
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_23 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 6729853 - 6729572
Alignment:
| Q |
17 |
tattcctcagtatatgacagcatcatagtacatataagtcagatttaattatatatatatgtatgtggatagaacctttgtaagaatacgtacaaaagta |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6729853 |
tattcctcagtatatgacagcatcatagtacatataagtcagatttaattatatataaatgtatgtggatagaacctttgtaagaatacgtacaaaagta |
6729754 |
T |
|
| Q |
117 |
atttactttaacaactttctgaaaacgtaccaaacatatatgcagcatgcagagtactatctcnnnnnnnnnnnnnnaataaaatacgttaaaagatacc |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6729753 |
atttactttaacaactttctgaaaacgtaccaaacatatatgcagcatgcagagtactatctc--tctgtgtgtgtgaataaaatacgttaaaagatacc |
6729656 |
T |
|
| Q |
217 |
atcttgctagttctatcacttaacttacttccacacccccttttggattttactctcctataggttatggctatatcatttctc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6729655 |
atcttgctagttctatcacttaacttacttccacacccccttttggattttactctcctataggttatggctatatcatttctc |
6729572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University