View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_high_27 (Length: 256)
Name: NF12073_high_27
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_27 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 256
Target Start/End: Original strand, 13712906 - 13713149
Alignment:
| Q |
9 |
agcataggaagattaatagaacaatgaaacatagtggcaacacgaatatgcgacaatgtcagattcacaagggttttgcagcagaagatggtaggtgcca |
108 |
Q |
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| T |
13712906 |
agcaaaggaagattaatagaacaatgaaacatagtggcaacacgaataagcgtcaatgtcaggttcacaagggttttgcagcagaagattgtaggcgcca |
13713005 |
T |
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| Q |
109 |
aagggacgtgtaaaaaatatggaaagtgtagacggagaacctcaatgtggcggtgttttgcagcttcaacccatctgtagaaacagtcactctcattctc |
208 |
Q |
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| T |
13713006 |
aagggacgtataaaaaatatgaaaagtgcagacggagaacctcaatgtggcggtgttttgccgcttcaacccatctgttgaaatagtcactctcattctc |
13713105 |
T |
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| Q |
209 |
ccagagtgagttcagacatacaactgagatgaaaagattttagggtta |
256 |
Q |
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| T |
13713106 |
cca----gagttcaaacatacaactgagatgaaaagattttagggtta |
13713149 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 19805667 - 19805621
Alignment:
| Q |
74 |
cacaagggttttgcagcagaagatggtaggtgccaaagggacgtgta |
120 |
Q |
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| T |
19805667 |
cacaagtgttttgcagcagaagacagtaggtgctaaagggacgtgta |
19805621 |
T |
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