View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12073_high_32 (Length: 245)

Name: NF12073_high_32
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12073_high_32
NF12073_high_32
[»] chr5 (2 HSPs)
chr5 (5-241)||(17582432-17582668)
chr5 (44-145)||(34515480-34515580)
[»] chr7 (3 HSPs)
chr7 (1-241)||(14744668-14744908)
chr7 (52-141)||(29099228-29099318)
chr7 (53-130)||(41808764-41808841)
[»] chr3 (3 HSPs)
chr3 (22-202)||(51766554-51766732)
chr3 (39-131)||(50731448-50731540)
chr3 (39-131)||(50781314-50781406)
[»] chr1 (2 HSPs)
chr1 (17-147)||(46173614-46173746)
chr1 (82-131)||(47476372-47476421)
[»] chr2 (3 HSPs)
chr2 (52-149)||(36148779-36148876)
chr2 (41-129)||(36264775-36264863)
chr2 (82-129)||(40877754-40877801)
[»] chr8 (2 HSPs)
chr8 (72-172)||(10675054-10675154)
chr8 (52-122)||(12145892-12145962)
[»] chr6 (1 HSPs)
chr6 (19-107)||(7076407-7076494)
[»] chr4 (4 HSPs)
chr4 (40-131)||(26141926-26142017)
chr4 (85-147)||(44278756-44278818)
chr4 (53-131)||(32573463-32573539)
chr4 (39-131)||(26001843-26001934)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 17582432 - 17582668
Alignment:
Q  5 aagccgaacttgttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacaca 104  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17582432 aagccgaacttgttcagaggtggacctaggtggagacatgggaggaccatggcctccccaaagtctcaaaaacttcatttttaacaggtatataaacaca 17582531  T
Q  105 tttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggtaatgcatctcgcctttgagctttag 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17582532 tttttacctaaatgttatgttatatattgtaacgtttacattatacatcactcgtttacactccagcacagtggtaatgcatctcgcctttgagctttag 17582631  T
Q  205 attgcttatttgatccttgattcgtccatttttatcc 241  Q
     |||||| |||||||||||||||||||| ||||||||    
T  17582632 gttgcttctttgatccttgattcgtccacttttatcc 17582668  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 145
Target Start/End: Complemental strand, 34515580 - 34515480
Alignment:
Q  44 gggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttac 143  Q
    |||||| ||| |||||||||||||||||||||| ||| ||||||  || |||||||||||| ||||| |||| |||||| ||||||||  ||||||||||    
T  34515580 gggagggccagggcctccccaaagtctcaaaaatttcatttttagtagatatataaacaca-ttttatctaattgttatattatatatactaacgtttac 34515482  T
Q  144 at 145  Q
    ||    
T  34515481 at 34515480  T

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Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 14744908 - 14744668
Alignment:
Q  1 actgaagccgaacttgttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaa 100  Q
    |||||||  |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14744908 actgaagttgaacttgttcggaggcggacctaggtggagacatgggaggaccatggcctccccaaagtctcaaaaacttcatttttaacaggtatataaa 14744809  T
Q  101 cacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggtaatgcatctcgcctttgagct 200  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14744808 catatttttacctaaatgttatgttatatattgtaacgtttacgttatacgtcacttgtttacactccagcacagtggtaatgcatctcgcctttgagct 14744709  T
Q  201 ttagattgcttatttgatccttgattcgtccatttttatcc 241  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  14744708 ttaggttgcttatttgatccttgattcgtccatttttatcc 14744668  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 29099228 - 29099318
Alignment:
Q  52 catggcctccccaaagtctcaaaaacttct-tttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgttt 141  Q
    ||||||||||||||||| | ||||| |||  ||||||| ||||||||| ||||||||||| ||||||||||||||||||||  ||||||||    
T  29099228 catggcctccccaaagtttaaaaaaattccatttttaataggtatatagacacatttttaactaaatgttatgttatatatattaacgttt 29099318  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 130
Target Start/End: Original strand, 41808764 - 41808841
Alignment:
Q  53 atggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatata 130  Q
    ||||||||| ||||||||||||   ||| ||||||| |||||| || | ||||||||||||||| ||||| |||||||    
T  41808764 atggcctcctcaaagtctcaaagttttcatttttaataggtatgtatatacatttttacctaaaagttatattatata 41808841  T

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Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 51766732 - 51766554
Alignment:
Q  22 aggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgtta 121  Q
    ||||||| |||||||| || | |||| |  ||||||||||||||||||||||||| ||| ||||||| |||||||  |||||||||||| ||||||||||    
T  51766732 aggcggagctaggtggggaaaggggatggtcatggcctccccaaagtctcaaaaatttcatttttaataggtata--aacacatttttagctaaatgtta 51766635  T
Q  122 tgttatatattgtaacgtttacattatacgtcactcgtttacactccagcacagtggtaatgcatctcgcctttgagcttt 202  Q
    | |||||||| |||| |||||||| ||| ||||  | |||||| ||||||||||  ||||| |||||||||||||||||||    
T  51766634 tattatatatagtaatgtttacatcataagtcatacatttacagtccagcacagcagtaatccatctcgcctttgagcttt 51766554  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 50731540 - 50731448
Alignment:
Q  39 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 131  Q
    ||||||||||| ||||| |||||| | |||||||||   ||  ||||||| |||||| || | ||||||||||||||| ||||| ||||||||    
T  50731540 gacatgggagggccatgacctcccgagagtctcaaagtttttatttttaataggtatgtatatacatttttacctaaaagttatattatatat 50731448  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 50781314 - 50781406
Alignment:
Q  39 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 131  Q
    ||||||||||| ||||| |||||| | |||||||||   ||  ||||||| |||||| || | ||||||||||||||| ||||| ||||||||    
T  50781314 gacatgggagggccatgacctcccgagagtctcaaagtttttatttttaataggtatgtatatacatttttacctaaaagttatattatatat 50781406  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 46173746 - 46173614
Alignment:
Q  17 ttcagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctc-aaaaacttcttttttaacagg--tatataaacacatttttacct 113  Q
    |||||||||||| |||||||| |||  |||| ||||||||| |||||||| |||| |||||  || ||||||| |||  |||||||||||| ||||||||    
T  46173746 ttcagaggcggatctaggtggggactggggatgaccatggcgtccccaaaatctcaaaaaaaatcatttttaataggtatatataaacaca-ttttacct 46173648  T
Q  114 aaatgttatgttatatattgtaacgtttacatta 147  Q
    |||| |||| |||||||| || ||| ||||||||    
T  46173647 aaatattatattatatatagtgacgcttacatta 46173614  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 47476421 - 47476372
Alignment:
Q  82 tttttaacaggtatataaacacatttttacctaaatgttatgttatatat 131  Q
    ||||||| ||||||||| ||||||||||| |||||| ||||||| |||||    
T  47476421 tttttaataggtatatatacacatttttaactaaatattatgttgtatat 47476372  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 36148876 - 36148779
Alignment:
Q  52 catggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattata 149  Q
    ||||||||||||||||| | |||||   | ||||||| ||||||||| ||||| |||||  |||||||||||||||||||  |||||||| |||||||    
T  36148876 catggcctccccaaagtttaaaaaaaaacatttttaataggtatatatacacagttttaattaaatgttatgttatatatattaacgtttgcattata 36148779  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 41 - 129
Target Start/End: Complemental strand, 36264863 - 36264775
Alignment:
Q  41 catgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatat 129  Q
    |||||||||  ||||||||||||||||| || |||| ||  ||||||| |||||||||   ||||||||| ||||||||||||||||||    
T  36264863 catgggagggtcatggcctccccaaagtatccaaaattttatttttaataggtatatattaacatttttagctaaatgttatgttatat 36264775  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 40877754 - 40877801
Alignment:
Q  82 tttttaacaggtatataaacacatttttacctaaatgttatgttatat 129  Q
    ||||||| || |||||| ||||||||||| ||||||||||||||||||    
T  40877754 tttttaatagttatatatacacatttttagctaaatgttatgttatat 40877801  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 172
Target Start/End: Complemental strand, 10675154 - 10675054
Alignment:
Q  72 aaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacattatacgtcactcgtttacactccagc 171  Q
    ||||| ||| ||||||| |||| || | ||||||||||| ||||||||||||||||||||  |||||||| ||||||| |||||   ||||||||| |||    
T  10675154 aaaaaattcatttttaataggtgtaaatacacatttttaactaaatgttatgttatatatattaacgtttgcattataagtcacgtctttacactctagc 10675055  T
Q  172 a 172  Q
    |    
T  10675054 a 10675054  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 12145892 - 12145962
Alignment:
Q  52 catggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttat 122  Q
    |||||| |||||||||| | ||||| ||| ||||||| ||||||||| |||||||||||  ||||||||||    
T  12145892 catggcatccccaaagttttaaaaaattcatttttaataggtatatatacacatttttaattaaatgttat 12145962  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 7076494 - 7076407
Alignment:
Q  19 cagaggcggacctaggtggcgacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacattt 107  Q
    |||||||||| |||||||| |||  || |||  ||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||    
T  7076494 cagaggcggagctaggtgg-gactgggaagggacatggcctccccaaagtctcaaaaatttcatttttaacatgtacataaacacattt 7076407  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 26141926 - 26142017
Alignment:
Q  40 acatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 131  Q
    |||||||||| |||||||||||| ||||||||||| | |||  |||||| |||||||||   |||||||||  || ||||||||||||||||    
T  26141926 acatgggagggccatggcctcccgaaagtctcaaacatttcaattttaataggtatatactgacatttttagttatatgttatgttatatat 26142017  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 85 - 147
Target Start/End: Complemental strand, 44278818 - 44278756
Alignment:
Q  85 ttaacaggtatataaacacatttttacctaaatgttatgttatatattgtaacgtttacatta 147  Q
    |||| ||||||||||| ||||||||| ||||||||||| ||||||||  |||||||| |||||    
T  44278818 ttaataggtatataaatacatttttaactaaatgttatattatatatattaacgtttgcatta 44278756  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 131
Target Start/End: Original strand, 32573463 - 32573539
Alignment:
Q  53 atggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 131  Q
    |||||||||| ||||||||||||| ||| ||||||| |  ||||||   ||||||| | ||||||||||||||||||||    
T  32573463 atggcctccctaaagtctcaaaaatttcatttttaata--tatatatcgacattttgagctaaatgttatgttatatat 32573539  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 26001843 - 26001934
Alignment:
Q  39 gacatgggaggaccatggcctccccaaagtctcaaaaacttcttttttaacaggtatataaacacatttttacctaaatgttatgttatatat 131  Q
    |||||| || |||||| ||  ||||||| ||||||||| ||| | ||||| |||||||||   ||||||| | ||||||||||||||||||||    
T  26001843 gacatgagatgaccatcgctcccccaaaatctcaaaaatttcatatttaataggtatatattgacatttt-agctaaatgttatgttatatat 26001934  T

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