View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_high_6 (Length: 531)
Name: NF12073_high_6
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 466; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 22 - 523
Target Start/End: Original strand, 38608982 - 38609483
Alignment:
| Q |
22 |
atgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatccta |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38608982 |
atgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatccta |
38609081 |
T |
|
| Q |
122 |
ttgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttagagccggatcatctactttattagattctccaggtcaggc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
38609082 |
ttgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggc |
38609181 |
T |
|
| Q |
222 |
gacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggagtcactactacagcaggtgtgtctcccatgcctgaggtcaagccaatg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38609182 |
gacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatg |
38609281 |
T |
|
| Q |
322 |
gttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaat |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38609282 |
gttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaat |
38609381 |
T |
|
| Q |
422 |
ttgtagttaataagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtg |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
38609382 |
ttgtagttaataagtttacagttacactgttgttcatgtactaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtg |
38609481 |
T |
|
| Q |
522 |
ct |
523 |
Q |
| |
|
|| |
|
|
| T |
38609482 |
ct |
38609483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 22 - 523
Target Start/End: Original strand, 38793765 - 38794266
Alignment:
| Q |
22 |
atgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatccta |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38793765 |
atgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatccta |
38793864 |
T |
|
| Q |
122 |
ttgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttagagccggatcatctactttattagattctccaggtcaggc |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
38793865 |
ttgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttggagccggagcatcaactttattagattctccaggtcaggc |
38793964 |
T |
|
| Q |
222 |
gacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggagtcactactacagcaggtgtgtctcccatgcctgaggtcaagccaatg |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38793965 |
gacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggtgtcactactacagcaggtgtgtctcccatgcctcaggtcaagccaatg |
38794064 |
T |
|
| Q |
322 |
gttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaat |
421 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38794065 |
gttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatgaaat |
38794164 |
T |
|
| Q |
422 |
ttgtagttaataagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtg |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
38794165 |
ttgtagttaataagtttacagttacactgttgttcatgtactaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtg |
38794264 |
T |
|
| Q |
522 |
ct |
523 |
Q |
| |
|
|| |
|
|
| T |
38794265 |
ct |
38794266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 22 - 441
Target Start/End: Complemental strand, 38121141 - 38120719
Alignment:
| Q |
22 |
atgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatccta |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
38121141 |
atgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagattgttgtgcacagcgtgtatttgccttttccgcatatcaatccta |
38121042 |
T |
|
| Q |
122 |
ttgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttagagccggatcatctactttattagattctccaggtcaggc |
221 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||| ||||| || | ||||| ||| ||||||| | |||||||| |
|
|
| T |
38121041 |
ttgcggctgcttatgatactatcttaggaggtgaaggagcatcggaaggagcgggtgtcggagccagagctgctactgtatcagattctgctggtcaggc |
38120942 |
T |
|
| Q |
222 |
gacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggagtcactactacagcaggtgtgtctcccatgcctgaggtcaagccaatg |
321 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
38120941 |
cacggaagaaacctgctctgctcctgatggacgtggtggttgtgctgctgatgtcactactgcagcaggtgtgtctcccatgcctcaggtcaagccaatg |
38120842 |
T |
|
| Q |
322 |
gttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatg---atgaagattgcggtttagttctttctctgctgaagtgaatctctatta |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
38120841 |
gttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctatga |
38120742 |
T |
|
| Q |
419 |
aatttgtagttaataagtttaca |
441 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
38120741 |
aatttgtagttaataagtttaca |
38120719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 286 - 396
Target Start/End: Original strand, 34592844 - 34592957
Alignment:
| Q |
286 |
gcaggtgtgtctcccatgcctgaggtcaagccaatggttgagattgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgcg |
382 |
Q |
| |
|
||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
34592844 |
gcaggtgtgtctcccgtgcctcgggtcaggccaatggttgagattgaagatcaccatggcctgtgagtgtgatgcttcaatgatgatgatgaagattgcg |
34592943 |
T |
|
| Q |
383 |
gtttagttctttct |
396 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
34592944 |
gtttacttctttct |
34592957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 464 - 523
Target Start/End: Original strand, 34592970 - 34593029
Alignment:
| Q |
464 |
aaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtgct |
523 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
34592970 |
aaagtgaaactctgaatttgtagttaacttgcattgttgtttagtttgtggctttgtgct |
34593029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 430
Target Start/End: Original strand, 38287450 - 38287498
Alignment:
| Q |
382 |
ggtttagttctttctctgctgaagtgaatctctattaaatttgtagtta |
430 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||| ||| ||||||||| |
|
|
| T |
38287450 |
ggtttacttctttttctgctgaagtgaaactctatgaaacttgtagtta |
38287498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 501
Target Start/End: Original strand, 38609502 - 38609538
Alignment:
| Q |
465 |
aagtgaaactctgaatttgtagttaactcacattgtt |
501 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38609502 |
aagtgaaactttgaatttgtagttaattcacattgtt |
38609538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 501
Target Start/End: Original strand, 38794285 - 38794321
Alignment:
| Q |
465 |
aagtgaaactctgaatttgtagttaactcacattgtt |
501 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
38794285 |
aagtgaaactttgaatttgtagttaattcacattgtt |
38794321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 260; Significance: 1e-144; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 22 - 441
Target Start/End: Complemental strand, 28730715 - 28730296
Alignment:
| Q |
22 |
atgaggattaactatgtgagagttaaggttgctgacgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatccta |
121 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28730715 |
atgaggattaactatgttagggtgaaggttgctgacgtcatccgtaatgtgaagatagttgtgcatagtgtgtatttgccttttccgcatatcaatccta |
28730616 |
T |
|
| Q |
122 |
ttgcggctgcttatgatactatattaggaggtgaaggagcgtcggaaggagcaggtgttagagccggatcatctactttattagattctccaggtcaggc |
221 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| || | ||||| ||| ||||||| | |||||||| |
|
|
| T |
28730615 |
ttgcggatgcttatgatactatcttaggaggtgaaggagcatcggaaggagcaggtgtcggagccagagctgctactgtatcagattctgctggtcaggc |
28730516 |
T |
|
| Q |
222 |
gacggaagaaacctgctctgctcttgatggacgtggtggttgtgctgctggagtcactactacagcaggtgtgtctcccatgcctgaggtcaagccaatg |
321 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||| |||||||||| |||||| || || |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
28730515 |
gactgaagaaacctgctctgctcttgatgggcgtggtggctgtgctgctgatgtcactgctgcaacaggtgtgtctcccatgcctcaggtcaggccaatg |
28730416 |
T |
|
| Q |
322 |
gttgagattgaagatcaccatggcctgtgagtgcgatgcttcgatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| || ||| |||| |||||||||| |||| |||||||||||||||||| || || ||| |||| |
|
|
| T |
28730415 |
tttgagattgaagatcaccatggcctgtgagtgtgatggtttgatcatgacgaagattgcgatttacttctttctctgctgaagtaaaactatatgaaat |
28730316 |
T |
|
| Q |
422 |
ttgtagttaataagtttaca |
441 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
28730315 |
ttgtagttaataagtttaca |
28730296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 328 - 524
Target Start/End: Original strand, 33078483 - 33078658
Alignment:
| Q |
328 |
attgaagatcaccatggcctgtgagtgcgatgcttc---gatgatgatgaagattgcggtttagttctttctctgctgaagtgaatctctattaaatttg |
424 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||| |
|
|
| T |
33078483 |
attgaagatcaccatgggctgtgactgcgatgcttcaatgatgatgatgaagatcgcggtttacttctttctctg------------------aaatttg |
33078564 |
T |
|
| Q |
425 |
tagttaataagtttacagttacactgttgttcatatactaaagtgaaactctgaatttgtagttaactcacattgttgtttagtttgtggctctgtgctc |
524 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| |
|
|
| T |
33078565 |
tagttaataagtttac------actgttgttcatgtacaaaagtgaaactctgaatttgtagttaactcgcattgttgtttagtttgtggctttgtgctc |
33078658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 18224426 - 18224363
Alignment:
| Q |
57 |
cgtcatccgcaatgtgaagatagttgtgcacagtgtgtatttgccttttccgcatatcaatcct |
120 |
Q |
| |
|
|||||||||||| || ||||| || |||||||||||||| ||||| ||||| ||||| |||||| |
|
|
| T |
18224426 |
cgtcatccgcaacgtcaagatcgtcgtgcacagtgtgtacttgccatttccacatattaatcct |
18224363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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