View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_high_8 (Length: 493)
Name: NF12073_high_8
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 159 - 459
Target Start/End: Complemental strand, 43706568 - 43706268
Alignment:
| Q |
159 |
ccatagacgactacattaccctaaggtaacgacaagtagggtcaatttcaacaacatctggatcaggaggctcaagaagagccgaaccttcctcaaagaa |
258 |
Q |
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| T |
43706568 |
ccatagacgactacattaccctaaggtaacgacaagtagggtcaatttcaacaacatctggatcaggaggctcaagaagagccgaaccttcctcaaagaa |
43706469 |
T |
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| Q |
259 |
ttctgggtccgccaaactcatgctataattccttccctacaaatcatcaatcacaacaaaatgtacaattgtatatgtttgggatcaaaaattaaaattg |
358 |
Q |
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| T |
43706468 |
ttctgggtccgccaaactcatgctataattccttccctacaaatcatcaatcacaacaaaatgtacaattgtatatgtttgggatcaaaaattaaaattg |
43706369 |
T |
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| Q |
359 |
agcaattgtttgaagtctttgtagcatcgacacttttgaattctgatctaagatgtgtcactgtccaacatgtgtctgattacattgaattttgttattt |
458 |
Q |
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| T |
43706368 |
agcaattgtttgaagtctttgtagcatcgacacttttgaattctgatctaagatgtgtcactgtccaacatgtgtctgattacattgaattttgttattt |
43706269 |
T |
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| Q |
459 |
t |
459 |
Q |
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| T |
43706268 |
t |
43706268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 43706685 - 43706634
Alignment:
| Q |
42 |
ggatacacagtcttgaaagctcctttgcctatgacttccttatactgtcatg |
93 |
Q |
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| T |
43706685 |
ggatacacagtcttgaaagctcctttgcctatgacttccttatactgtcatg |
43706634 |
T |
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