View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12073_high_9 (Length: 453)

Name: NF12073_high_9
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12073_high_9
NF12073_high_9
[»] chr4 (17 HSPs)
chr4 (1-375)||(5348619-5348993)
chr4 (1-338)||(5410199-5410554)
chr4 (14-250)||(5500059-5500295)
chr4 (3-250)||(5352193-5352440)
chr4 (14-338)||(5390753-5391095)
chr4 (10-250)||(5376539-5376779)
chr4 (3-250)||(5425941-5426188)
chr4 (9-338)||(5399083-5399430)
chr4 (256-338)||(5352087-5352169)
chr4 (250-338)||(5426206-5426294)
chr4 (373-407)||(55549961-55549995)
chr4 (253-338)||(5376433-5376518)
chr4 (374-406)||(795699-795731)
chr4 (373-403)||(13236138-13236168)
chr4 (374-403)||(14288639-14288668)
chr4 (374-407)||(37519373-37519406)
chr4 (374-407)||(37523589-37523622)
[»] chr5 (12 HSPs)
chr5 (41-250)||(20326724-20326933)
chr5 (371-407)||(24622699-24622735)
chr5 (372-407)||(3868221-3868256)
chr5 (375-421)||(6095192-6095238)
chr5 (374-407)||(3700894-3700927)
chr5 (374-407)||(10031997-10032030)
chr5 (253-338)||(20326618-20326703)
chr5 (371-407)||(30322432-30322468)
chr5 (375-406)||(14184606-14184637)
chr5 (373-407)||(27890340-27890374)
chr5 (373-406)||(4057221-4057254)
chr5 (374-407)||(8424637-8424670)
[»] chr6 (7 HSPs)
chr6 (375-421)||(18864472-18864518)
chr6 (373-421)||(10198982-10199030)
chr6 (373-406)||(12576869-12576902)
chr6 (374-407)||(23149332-23149365)
chr6 (374-406)||(15339385-15339417)
chr6 (375-407)||(24202643-24202675)
chr6 (374-402)||(24200920-24200948)
[»] chr1 (11 HSPs)
chr1 (371-407)||(52508132-52508168)
chr1 (372-406)||(28969511-28969545)
chr1 (374-407)||(6300525-6300558)
chr1 (373-406)||(16048435-16048468)
chr1 (374-406)||(7102780-7102812)
chr1 (374-406)||(25066553-25066585)
chr1 (373-407)||(2349493-2349527)
chr1 (373-407)||(24493726-24493760)
chr1 (373-407)||(37384073-37384107)
chr1 (373-407)||(48770623-48770657)
chr1 (374-406)||(14862415-14862447)
[»] chr8 (14 HSPs)
chr8 (373-408)||(23102939-23102974)
chr8 (373-407)||(14787365-14787399)
chr8 (373-407)||(14787588-14787622)
chr8 (373-407)||(14787811-14787845)
chr8 (373-407)||(14788034-14788068)
chr8 (373-407)||(14788257-14788291)
chr8 (373-407)||(14788480-14788514)
chr8 (374-407)||(14788701-14788734)
chr8 (374-406)||(4971292-4971324)
chr8 (373-407)||(18665996-18666030)
chr8 (373-406)||(14105028-14105061)
chr8 (374-407)||(25200563-25200596)
chr8 (375-407)||(30334055-30334087)
chr8 (374-406)||(33854788-33854820)
[»] chr3 (6 HSPs)
chr3 (373-408)||(15321309-15321344)
chr3 (373-406)||(682684-682717)
chr3 (374-407)||(27276370-27276403)
chr3 (373-420)||(37797237-37797284)
chr3 (373-406)||(41756769-41756802)
chr3 (371-407)||(10118558-10118594)
[»] chr2 (9 HSPs)
chr2 (372-407)||(24255451-24255486)
chr2 (374-421)||(40483710-40483757)
chr2 (373-407)||(2870628-2870662)
chr2 (373-407)||(3650549-3650583)
chr2 (373-407)||(26912899-26912933)
chr2 (374-406)||(24270556-24270588)
chr2 (374-407)||(21418833-21418866)
chr2 (374-406)||(3564632-3564664)
chr2 (374-406)||(11042442-11042474)
[»] scaffold0583 (1 HSPs)
scaffold0583 (374-420)||(5847-5893)
[»] scaffold0131 (1 HSPs)
scaffold0131 (373-407)||(29153-29187)
[»] scaffold0118 (1 HSPs)
scaffold0118 (373-407)||(19049-19083)
[»] scaffold0012 (1 HSPs)
scaffold0012 (372-406)||(53000-53034)
[»] chr7 (7 HSPs)
chr7 (373-407)||(42239886-42239920)
chr7 (373-407)||(46053545-46053579)
chr7 (372-405)||(7044592-7044625)
chr7 (373-407)||(12773141-12773175)
chr7 (374-407)||(12730784-12730817)
chr7 (374-406)||(12727309-12727341)
chr7 (374-406)||(42074059-42074091)
[»] scaffold0073 (5 HSPs)
scaffold0073 (372-405)||(13425-13458)
scaffold0073 (373-406)||(48463-48496)
scaffold0073 (381-421)||(23285-23325)
scaffold0073 (374-406)||(48718-48750)
scaffold0073 (374-406)||(53249-53281)
[»] scaffold0029 (2 HSPs)
scaffold0029 (373-421)||(133358-133406)
scaffold0029 (372-407)||(102888-102923)
[»] scaffold0025 (1 HSPs)
scaffold0025 (373-405)||(22120-22152)
[»] scaffold0002 (1 HSPs)
scaffold0002 (373-421)||(311186-311234)
[»] scaffold0770 (1 HSPs)
scaffold0770 (372-407)||(4584-4619)
[»] scaffold0356 (1 HSPs)
scaffold0356 (373-406)||(2461-2494)
[»] scaffold0316 (1 HSPs)
scaffold0316 (374-407)||(8674-8707)
[»] scaffold0276 (1 HSPs)
scaffold0276 (373-406)||(181-214)
[»] scaffold0090 (1 HSPs)
scaffold0090 (374-407)||(41176-41209)
[»] scaffold0003 (1 HSPs)
scaffold0003 (374-407)||(192892-192925)
[»] scaffold0281 (1 HSPs)
scaffold0281 (374-406)||(9808-9840)
[»] scaffold0196 (1 HSPs)
scaffold0196 (374-406)||(25528-25560)
[»] scaffold0150 (1 HSPs)
scaffold0150 (374-406)||(8039-8071)


Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Original strand, 5348619 - 5348993
Alignment:
Q  1 acgaaagtcattaaaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaaga 100  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| || |||||||| |||||||||    
T  5348619 acgaaaatcattaaaagccaaattcagactctgcagatattgcaagctgaaaagagcacttgaattgtcaagtcctccggaaatagactcatgactaaga 5348718  T
Q  101 tcaagggctgtaacatgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5348719 tcaagggctgtaacatgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggagtttgtaa 5348818  T
Q  201 ggttgaaagtgaggttgtttttcaaatggagcaacaaggaacgttcatggaccaaaaaattattagaactggaattgattattctgaatggtataaagaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5348819 ggttgaaagtgaggttgtttttcaaatggagcaacaaggaacgttcatggaccaaaaaattattagaactggaattgattattctgaatggtataaagaa 5348918  T
Q  301 aatccaaaggattatgtgtgctctcatagtgaattatggtataaagaaaatgtaaagaagaggctttttgtgaat 375  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5348919 aatccaaaggattatgtgtactctcatagtgaattatggtataaagaaaatgtaaagaagaggctttttgtgaat 5348993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 5410554 - 5410199
Alignment:
Q  1 acgaaagtcattaaaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaaga 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  5410554 acgaaagtgattaaaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcattaagtcctccggagatagactcttgactaaga 5410455  T
Q  101 tcaagggctgtaacatgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaa 200  Q
    |||||| ||||||||||||| | ||| ||||| ||||| |||||||| |||||||||||||||| |||||||||||||| ||||||||| ||||||||      
T  5410454 tcaaggactgtaacatgtccctgtttacatgtcaccccgtgccattggcaacaatcatcatcactttggttccaatgaactagctttgaagattttgtgg 5410355  T
Q  201 ggttgaaagtgaggttgtttttcaaatggagcaacaaggaacgttcatg------------------gaccaaaaaattattagaactggaattgattat 282  Q
    |||||||  | ||  |||||||||| ||||||||||| ||| |||||||                  ||||||||| ||||| || |||||| ||||||     
T  5410354 ggttgaatatcagactgtttttcaattggagcaacaaagaatgttcatggccatgacagtagccattgaccaaaaacttatttgagctggaaatgattaa 5410255  T
Q  283 tctgaatggtataaagaaaatccaaaggattatgtgtgctctcatagtgaattatg 338  Q
     ||||||||||||||||||| | ||| || ||||||||||||||||||||||||||    
T  5410254 gctgaatggtataaagaaaagcaaaaagactatgtgtgctctcatagtgaattatg 5410199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 5500295 - 5500059
Alignment:
Q  14 aaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaagatcaagggctgtaa 113  Q
    |||||||||||||| |||||||  | ||||| |||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |    
T  5500295 aaagccaaattcaggctctgcaagtcttgcaagctgaatagagcacttgaatcattaagtcctcctgagatagactcttgactaagatcaagggctgtca 5500196  T
Q  114 catgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaaggttgaaagtgag 213  Q
    |||||||||||||||||||||||||||||||||| |||||||||| || || |||||||||||||| || |||||||||||||||  |||||||  | ||    
T  5500195 catgtccatctttgcatgttaccccatgccattggcaacaatcataattactttggttccaatgaactaactttgaggattttgtggggttgaatattag 5500096  T
Q  214 gttgtttttcaaatggagcaacaaggaacgttcatgg 250  Q
    |||||||||||| ||||||||||||||||||||||||    
T  5500095 gttgtttttcaattggagcaacaaggaacgttcatgg 5500059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 5352440 - 5352193
Alignment:
Q  3 gaaagtcattaaaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaagatc 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| || ||||||||||||||||||||    
T  5352440 gaaagtcattaaatgccaaattcagactctgcagatattgcaggctgaaaatagcacttgaatcattaagtcctccggaaatagactcttgactaagatc 5352341  T
Q  103 aagggctgtaacatgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaagg 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||  |||| ||| |||||||| | ||| ||||| ||||||    ||    
T  5352340 aagggctgtaacatgtccatctttgcatgttaccccatgccatttgcaacaatcatattcactttgattccaatgcactagttttgaagatttttcgggg 5352241  T
Q  203 ttgaaagtgaggttgtttttcaaatggagcaacaaggaacgttcatgg 250  Q
    |||||  | |||||||||||||| ||||||||||| ||||||| ||||    
T  5352240 ttgaatataaggttgtttttcaattggagcaacaacgaacgttgatgg 5352193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 14 - 338
Target Start/End: Complemental strand, 5391095 - 5390753
Alignment:
Q  14 aaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaagatcaagggctgtaa 113  Q
    |||||||||||||| |||||||  ||||||||||||||||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||    
T  5391095 aaagccaaattcaggctctgcaagtattgcaggctgaaaagagcacttgaatcattaagtcctccggaaatagactcttgactaagatcaagggctgtaa 5390996  T
Q  114 catgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaaggttgaaagtgag 213  Q
    ||||||||||||||||||||||||||| |||||| ||||||||||  |||| ||| |||||||||| ||||||||| ||| ||     ||||||  | ||    
T  5390995 catgtccatctttgcatgttaccccatcccattggcaacaatcatgttcactttgcttccaatgaactagctttgaagatatttcggagttgaatatcag 5390896  T
Q  214 gttgtttttcaaatggagcaacaaggaacgttcatgg------------------accaaaaaattattagaactggaattgattattctgaatggtata 295  Q
    |||||||||||| ||||||||||||||||||| ||||                  |||| |||||| |||||||||||||| ||||| |||||||||||     
T  5390895 gttgtttttcaattggagcaacaaggaacgttgatggccatgacagtagccattcaccacaaaattgttagaactggaatttattatgctgaatggtatt 5390796  T
Q  296 aagaaaatccaaaggattatgtgtgctctcatagtgaattatg 338  Q
    ||||||| ||||| |||||| |||||| |||||||||| ||||    
T  5390795 aagaaaagccaaaagattatatgtgctatcatagtgaagtatg 5390753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 10 - 250
Target Start/End: Complemental strand, 5376779 - 5376539
Alignment:
Q  10 attaaaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaagatcaagggct 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||| ||||||||| || ||||||||| |||||||||||||||||    
T  5376779 attaaaagccaaattcagaccctgcagatattgcaggctgaaaatggcacttgaatcgttaagtcctccggaaatagactctcgactaagatcaagggct 5376680  T
Q  110 gtaacatgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaaggttgaaag 209  Q
    |||||||||||||||||||||||||| ||||||||||  ||||||||||  |||| |||||||||||||| ||||||||| ||||||  | |||||||      
T  5376679 gtaacatgtccatctttgcatgttacaccatgccatttgcaacaatcatattcactttggttccaatgaactagctttgaagatttttcagggttgaata 5376580  T
Q  210 tgaggttgtttttcaaatggagcaacaaggaacgttcatgg 250  Q
    | | |||||| ||||| ||||||||||||| ||||| ||||    
T  5376579 tcaagttgttcttcaattggagcaacaaggcacgttgatgg 5376539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 3 - 250
Target Start/End: Original strand, 5425941 - 5426188
Alignment:
Q  3 gaaagtcattaaaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaagatc 102  Q
    |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||| ||||||| | | ||||||||| || |||||||| |||||||||||    
T  5425941 gaaagtcatttaaagctaaattcaaactctgcagatattgcaggctgaaaagagaacttgaagcattaagtcctccggaaatagactcatgactaagatc 5426040  T
Q  103 aagggctgtaacatgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaagg 202  Q
    ||||||||||||||| || ||| |||| |||||||||| |||||| |||||||||||||||  ||||||||||| || ||||||||| |||||||   ||    
T  5426041 aagggctgtaacatgcccctctatgcaagttaccccattccattggcaacaatcatcatcattttggttccaattaactagctttgaagattttgcgggg 5426140  T
Q  203 ttgaaagtgaggttgtttttcaaatggagcaacaaggaacgttcatgg 250  Q
    |||||  | ||| |||||||||||||||||||||| ||||||||||||    
T  5426141 ttgaatatcaggctgtttttcaaatggagcaacaaagaacgttcatgg 5426188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 5399430 - 5399083
Alignment:
Q  9 cattaaaagccaaattcagactctgcagatattgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaagatcaagggc 108  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||||||||| ||||| | ||||||||| || ||||||||||||||||||||||||||    
T  5399430 catttaaagctaaattcagactctgcagatattgcaggttgaaaagagcactagaatcattaagtcctccggaaatagactcttgactaagatcaagggc 5399331  T
Q  109 tgtaacatgtccatctttgcatgttaccccatgccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaaggttgaaa 208  Q
    |||||||||||| |||  ||| |||||||||| |||||| |||||||||||||||  ||||||||| |||| ||||||||| |||||| |  |||||||     
T  5399330 tgtaacatgtccctctacgcaagttaccccattccattggcaacaatcatcatcaatttggttccattgaactagctttgaagattttttggggttgaat 5399231  T
Q  209 gtgaggttgtttttcaaatggagcaacaaggaacgttcatgg------------------accaaaaaattattagaactggaattgattattctgaatg 290  Q
     | |   ||||||||||| |||||||||| ||||||||||||                  |||||||||||||| ||  ||||||||||||  |||||||    
T  5399230 atcaaactgtttttcaaaaggagcaacaaagaacgttcatggccatgacagtagccattaaccaaaaaattatttgagttggaattgattaagctgaatg 5399131  T
Q  291 gtataaagaaaatccaaaggattatgtgtgctctcatagtgaattatg 338  Q
    |||| ||||||| | ||| | |||||||||||||||||||||||||||    
T  5399130 gtatcaagaaaagcaaaaaggttatgtgtgctctcatagtgaattatg 5399083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 256 - 338
Target Start/End: Complemental strand, 5352169 - 5352087
Alignment:
Q  256 aaaattattagaactggaattgattattctgaatggtataaagaaaatccaaaggattatgtgtgctctcatagtgaattatg 338  Q
    |||||| | ||| |||||||| ||||  | ||||||||||||||||| ||||| ||||||||||||| |||||||||||||||    
T  5352169 aaaattgtgagagctggaatttattaagcagaatggtataaagaaaagccaaaagattatgtgtgctttcatagtgaattatg 5352087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 250 - 338
Target Start/End: Original strand, 5426206 - 5426294
Alignment:
Q  250 gaccaaaaaattattagaactggaattgattattctgaatggtataaagaaaatccaaaggattatgtgtgctctcatagtgaattatg 338  Q
    |||||||||| |||| || |||||||||||||  ||||||||||| ||||||| | ||| | ||| |||||||||||| ||||||||||    
T  5426206 gaccaaaaaaatatttgagctggaattgattaagctgaatggtatcaagaaaagcaaaaaggttaagtgtgctctcatcgtgaattatg 5426294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 55549961 - 55549995
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  55549961 aatctatataatataaatttaggacctatttcata 55549995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 5376518 - 5376433
Alignment:
Q  253 caaaaaattattagaactggaattgattattctgaatggtataaagaaaatccaaaggattatgtgtgctctcatagtgaattatg 338  Q
    ||||||||||||||  |||||||| ||    |||||| | |||||||||| |||||  ||||| ||||||||||||||||||||||    
T  5376518 caaaaaattattagtgctggaatttatggagctgaatagcataaagaaaagccaaaaaattatatgtgctctcatagtgaattatg 5376433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 795731 - 795699
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||||||||||    
T  795731 atctatataatataaatttaggacctatttcat 795699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 403
Target Start/End: Original strand, 13236138 - 13236168
Alignment:
Q  373 aatctatataatataaatttaggacctattt 403  Q
    |||||||||||||||||||||||||||||||    
T  13236138 aatctatataatataaatttaggacctattt 13236168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 403
Target Start/End: Original strand, 14288639 - 14288668
Alignment:
Q  374 atctatataatataaatttaggacctattt 403  Q
    ||||||||||||||||||||||||||||||    
T  14288639 atctatataatataaatttaggacctattt 14288668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 37519373 - 37519406
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||| ||||||||    
T  37519373 atctatataatataaatttaggacccatttcata 37519406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 37523589 - 37523622
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||| ||||||||    
T  37523589 atctatataatataaatttaggacccatttcata 37523622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 110; Significance: 3e-55; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 41 - 250
Target Start/End: Complemental strand, 20326933 - 20326724
Alignment:
Q  41 tgcaggctgaaaagagcacttgaatcgtcaagtcctcctgagatagactcttgactaagatcaagggctgtaacatgtccatctttgcatgttaccccat 140  Q
    |||||||||||||  ||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20326933 tgcaggctgaaaatggcacttgaatcgttaagtcctccggaaatagactcttgactaagatcaagggctgtaacatgtccatctttgcatgttacaccat 20326834  T
Q  141 gccattgacaacaatcatcatcaccttggttccaatgaaatagctttgaggattttgtaaggttgaaagtgaggttgtttttcaaatggagcaacaagga 240  Q
    ||||||  ||||||||||  |||| |||||||||||||| ||||||||| ||||||  | |||||||  | | |||||| ||||| |||||||||| ||     
T  20326833 gccatttgcaacaatcatattcactttggttccaatgaactagctttgaagatttttcagggttgaatatcaagttgttcttcaattggagcaacacggc 20326734  T
Q  241 acgttcatgg 250  Q
    ||||| ||||    
T  20326733 acgttgatgg 20326724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 407
Target Start/End: Original strand, 24622699 - 24622735
Alignment:
Q  371 tgaatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||||    
T  24622699 tgaatctatataatataaatttaggacctatttcata 24622735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 3868221 - 3868256
Alignment:
Q  372 gaatctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||||||||||||    
T  3868221 gaatctatataatataaatttaggacctatttcata 3868256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 6095238 - 6095192
Alignment:
Q  375 tctatataatataaatttaggacctatttcatatttcattatggaag 421  Q
    ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  6095238 tctatataatataaatttaggacttatttcatatcccattatggaag 6095192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 3700927 - 3700894
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||||||||||    
T  3700927 atctatataatataaatttaggacctatttcata 3700894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 10032030 - 10031997
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||||||||||    
T  10032030 atctatataatataaatttaggacctatttcata 10031997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 253 - 338
Target Start/End: Complemental strand, 20326703 - 20326618
Alignment:
Q  253 caaaaaattattagaactggaattgattattctgaatggtataaagaaaatccaaaggattatgtgtgctctcatagtgaattatg 338  Q
    ||||||||||||||  |||||||| ||    |||||| | |||||||||| |||||  ||||| ||||||||||||||||||||||    
T  20326703 caaaaaattattagtgctggaatttatggagctgaatagcataaagaaaagccaaaaaattatatgtgctctcatagtgaattatg 20326618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 30322468 - 30322432
Alignment:
Q  371 tgaatctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||| |||||||||    
T  30322468 tgaatctatataatataaatttaggacatatttcata 30322432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 375 - 406
Target Start/End: Original strand, 14184606 - 14184637
Alignment:
Q  375 tctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||||||||||||    
T  14184606 tctatataatataaatttaggacctatttcat 14184637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 27890374 - 27890340
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||| ||||||||    
T  27890374 aatctatataatataaatttaggacccatttcata 27890340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 4057254 - 4057221
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||| |||||||||    
T  4057254 aatctatataatataaatttaggatctatttcat 4057221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 8424637 - 8424670
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||| ||||||||    
T  8424637 atctatataatataaatttaggacccatttcata 8424670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 375 - 421
Target Start/End: Complemental strand, 18864518 - 18864472
Alignment:
Q  375 tctatataatataaatttaggacctatttcatatttcattatggaag 421  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  18864518 tctatataatataaatttaggacctatttcatattccattatggaag 18864472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 421
Target Start/End: Complemental strand, 10199030 - 10198982
Alignment:
Q  373 aatctatataatataaatttaggacctatttcatatttcattatggaag 421  Q
    |||||||||||||||||||||||||||||||||| |  |||||||||||    
T  10199030 aatctatataatataaatttaggacctatttcatgtcccattatggaag 10198982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 12576902 - 12576869
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||||||||||||||    
T  12576902 aatctatataatataaatttaggacctatttcat 12576869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 23149332 - 23149365
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||||||||||    
T  23149332 atctatataatataaatttaggacctatttcata 23149365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 15339417 - 15339385
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||||||||||    
T  15339417 atctatataatataaatttaggacctatttcat 15339385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 24202675 - 24202643
Alignment:
Q  375 tctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||    
T  24202675 tctatataatataaatttaggacctatttcata 24202643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 402
Target Start/End: Complemental strand, 24200948 - 24200920
Alignment:
Q  374 atctatataatataaatttaggacctatt 402  Q
    |||||||||||||||||||||||||||||    
T  24200948 atctatataatataaatttaggacctatt 24200920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 52508168 - 52508132
Alignment:
Q  371 tgaatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||||    
T  52508168 tgaatctatataatataaatttaggacctatttcata 52508132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 406
Target Start/End: Complemental strand, 28969545 - 28969511
Alignment:
Q  372 gaatctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||||||||||||    
T  28969545 gaatctatataatataaatttaggacctatttcat 28969511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 6300525 - 6300558
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||||||||||    
T  6300525 atctatataatataaatttaggacctatttcata 6300558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 16048468 - 16048435
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||||||||||||||    
T  16048468 aatctatataatataaatttaggacctatttcat 16048435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 7102812 - 7102780
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||||||||||    
T  7102812 atctatataatataaatttaggacctatttcat 7102780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 25066553 - 25066585
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||||||||||    
T  25066553 atctatataatataaatttaggacctatttcat 25066585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 2349527 - 2349493
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||| ||||||||    
T  2349527 aatctatataatataaatttaggacccatttcata 2349493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 24493726 - 24493760
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||| ||||||||    
T  24493726 aatctatataatataaatttaggacccatttcata 24493760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 37384073 - 37384107
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||| ||||||||    
T  37384073 aatctatataatataaatttaggacccatttcata 37384107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 48770623 - 48770657
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||| ||||||||    
T  48770623 aatctatataatataaatttaggacccatttcata 48770657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 14862447 - 14862415
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||| ||||||    
T  14862447 atctatataatataaatttaggacctgtttcat 14862415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 408
Target Start/End: Original strand, 23102939 - 23102974
Alignment:
Q  373 aatctatataatataaatttaggacctatttcatat 408  Q
    ||||||||||||||||||||||||||||||||||||    
T  23102939 aatctatataatataaatttaggacctatttcatat 23102974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 14787399 - 14787365
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  14787399 aatctatataatataaatttaggacctatttcata 14787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 14787622 - 14787588
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  14787622 aatctatataatataaatttaggacctatttcata 14787588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 14787845 - 14787811
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  14787845 aatctatataatataaatttaggacctatttcata 14787811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 14788068 - 14788034
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  14788068 aatctatataatataaatttaggacctatttcata 14788034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 14788291 - 14788257
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  14788291 aatctatataatataaatttaggacctatttcata 14788257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 14788514 - 14788480
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  14788514 aatctatataatataaatttaggacctatttcata 14788480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 14788734 - 14788701
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||||||||||    
T  14788734 atctatataatataaatttaggacctatttcata 14788701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 4971324 - 4971292
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||||||||||    
T  4971324 atctatataatataaatttaggacctatttcat 4971292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 18666030 - 18665996
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||| ||||||||    
T  18666030 aatctatataatataaatttaggacccatttcata 18665996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 14105028 - 14105061
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||||| ||||||||    
T  14105028 aatctatataatataaatttaggacatatttcat 14105061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 25200563 - 25200596
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||| ||||||||||    
T  25200563 atctatataatataaatttaggatctatttcata 25200596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 30334087 - 30334055
Alignment:
Q  375 tctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||| ||||||||    
T  30334087 tctatataatataaatttaggacccatttcata 30334055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 33854788 - 33854820
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||| |||||||||||||    
T  33854788 atctatataatataaatttgggacctatttcat 33854820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 373 - 408
Target Start/End: Original strand, 15321309 - 15321344
Alignment:
Q  373 aatctatataatataaatttaggacctatttcatat 408  Q
    ||||||||||||||||||||||||||||||||||||    
T  15321309 aatctatataatataaatttaggacctatttcatat 15321344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 682684 - 682717
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||||||||||||||    
T  682684 aatctatataatataaatttaggacctatttcat 682717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 27276403 - 27276370
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||||||||||    
T  27276403 atctatataatataaatttaggacctatttcata 27276370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 420
Target Start/End: Original strand, 37797237 - 37797284
Alignment:
Q  373 aatctatataatataaatttaggacctatttcatatttcattatggaa 420  Q
    |||||||||||||||||||||||| |||||||||| ||  ||||||||    
T  37797237 aatctatataatataaatttaggatctatttcatagttttttatggaa 37797284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 41756769 - 41756802
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||| |||||||||||||    
T  41756769 aatctatataatataaatttgggacctatttcat 41756802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 407
Target Start/End: Complemental strand, 10118594 - 10118558
Alignment:
Q  371 tgaatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||| | ||||||||    
T  10118594 tgaatctatataatataaatttaggatccatttcata 10118558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 24255451 - 24255486
Alignment:
Q  372 gaatctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||||||||||||||    
T  24255451 gaatctatataatataaatttaggacctatttcata 24255486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 40483710 - 40483757
Alignment:
Q  374 atctatataatataaatttaggacctatttcatatttcattatggaag 421  Q
    ||||||||||||||||||||||||||||||||| |  |||||||||||    
T  40483710 atctatataatataaatttaggacctatttcatgtcccattatggaag 40483757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 2870628 - 2870662
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  2870628 aatctatataatataaatttaggacctatttcata 2870662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 3650583 - 3650549
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  3650583 aatctatataatataaatttaggacctatttcata 3650549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 26912899 - 26912933
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  26912899 aatctatataatataaatttaggacctatttcata 26912933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 24270588 - 24270556
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||||||||||    
T  24270588 atctatataatataaatttaggacctatttcat 24270556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 21418866 - 21418833
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||| |||||||||||||    
T  21418866 atctatataatataaatttatgacctatttcata 21418833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 3564632 - 3564664
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||| |||||||||    
T  3564632 atctatataatataaatttaggatctatttcat 3564664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 11042474 - 11042442
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||| ||||||||||||    
T  11042474 atctatataatataaatttaagacctatttcat 11042442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0583 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0583
Description:

Target: scaffold0583; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 374 - 420
Target Start/End: Original strand, 5847 - 5893
Alignment:
Q  374 atctatataatataaatttaggacctatttcatatttcattatggaa 420  Q
    ||||||||||||||||||||||||||||||||| || | ||||||||    
T  5847 atctatataatataaatttaggacctatttcatgttcctttatggaa 5893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 29187 - 29153
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  29187 aatctatataatataaatttaggacctatttcata 29153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0118 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 19049 - 19083
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  19049 aatctatataatataaatttaggacctatttcata 19083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 406
Target Start/End: Original strand, 53000 - 53034
Alignment:
Q  372 gaatctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||||||||||||||    
T  53000 gaatctatataatataaatttaggacctatttcat 53034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 42239920 - 42239886
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  42239920 aatctatataatataaatttaggacctatttcata 42239886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 373 - 407
Target Start/End: Complemental strand, 46053579 - 46053545
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||||||||||||    
T  46053579 aatctatataatataaatttaggacctatttcata 46053545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 7044625 - 7044592
Alignment:
Q  372 gaatctatataatataaatttaggacctatttca 405  Q
    ||||||||||||||||||||||||||||||||||    
T  7044625 gaatctatataatataaatttaggacctatttca 7044592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 373 - 407
Target Start/End: Original strand, 12773141 - 12773175
Alignment:
Q  373 aatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||||||| ||||||||    
T  12773141 aatctatataatataaatttaggacccatttcata 12773175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 12730817 - 12730784
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||| ||||||||    
T  12730817 atctatataatataaatttaggacccatttcata 12730784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 12727341 - 12727309
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||| |||||||||    
T  12727341 atctatataatataaatttaggatctatttcat 12727309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 42074059 - 42074091
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||| |||||||||    
T  42074059 atctatataatataaatttaggatctatttcat 42074091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 372 - 405
Target Start/End: Complemental strand, 13458 - 13425
Alignment:
Q  372 gaatctatataatataaatttaggacctatttca 405  Q
    ||||||||||||||||||||||||||||||||||    
T  13458 gaatctatataatataaatttaggacctatttca 13425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 48496 - 48463
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||||||| |||||||||    
T  48496 aatctatataatataaatttaggaactatttcat 48463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 23325 - 23285
Alignment:
Q  381 taatataaatttaggacctatttcatatttcattatggaag 421  Q
    ||||||||||||||||| |||||||| | ||||||||||||    
T  23325 taatataaatttaggacttatttcatgtctcattatggaag 23285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 48750 - 48718
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||| |||||||||    
T  48750 atctatataatataaatttaggaactatttcat 48718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 53281 - 53249
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||| |||||||||    
T  53281 atctatataatataaatttaggaactatttcat 53249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 133358 - 133406
Alignment:
Q  373 aatctatataatataaatttaggacctatttcatatttcattatggaag 421  Q
    ||||||||||||||||||||| |||||||||||| |  |||||||||||    
T  133358 aatctatataatataaatttatgacctatttcatgtcccattatggaag 133406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 102888 - 102923
Alignment:
Q  372 gaatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||| |||||||||||||    
T  102888 gaatctatataatataaatttatgacctatttcata 102923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 405
Target Start/End: Complemental strand, 22152 - 22120
Alignment:
Q  373 aatctatataatataaatttaggacctatttca 405  Q
    |||||||||||||||||||||||||||||||||    
T  22152 aatctatataatataaatttaggacctatttca 22120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 373 - 421
Target Start/End: Original strand, 311186 - 311234
Alignment:
Q  373 aatctatataatataaatttaggacctatttcatatttcattatggaag 421  Q
    ||||||||||||||||||||| |||||||||||| |  |||||||||||    
T  311186 aatctatataatataaatttatgacctatttcatgtcccattatggaag 311234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 407
Target Start/End: Original strand, 4584 - 4619
Alignment:
Q  372 gaatctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||||| |||||||||||||    
T  4584 gaatctatataatataaatttatgacctatttcata 4619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0356 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0356
Description:

Target: scaffold0356; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Original strand, 2461 - 2494
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    ||||||||||||||||||||||||| ||||||||    
T  2461 aatctatataatataaatttaggacatatttcat 2494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 8707 - 8674
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||| ||||||||    
T  8707 atctatataatataaatttaggacccatttcata 8674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0276 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 373 - 406
Target Start/End: Complemental strand, 214 - 181
Alignment:
Q  373 aatctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||| |||||||||||||    
T  214 aatctatataatataaatttgggacctatttcat 181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Original strand, 41176 - 41209
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    |||||||||||||||||||| |||||||||||||    
T  41176 atctatataatataaatttaagacctatttcata 41209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 407
Target Start/End: Complemental strand, 192925 - 192892
Alignment:
Q  374 atctatataatataaatttaggacctatttcata 407  Q
    ||||||||||||||||||||||||| ||||||||    
T  192925 atctatataatataaatttaggacccatttcata 192892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 9808 - 9840
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||| ||||||||||||    
T  9808 atctatataatataaatttaagacctatttcat 9840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Original strand, 25528 - 25560
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||| ||||||||||||||    
T  25528 atctatataatataaattcaggacctatttcat 25560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0150 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 374 - 406
Target Start/End: Complemental strand, 8071 - 8039
Alignment:
Q  374 atctatataatataaatttaggacctatttcat 406  Q
    |||||||||||||||||||| ||||||||||||    
T  8071 atctatataatataaatttaagacctatttcat 8039  T

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