View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_low_13 (Length: 388)
Name: NF12073_low_13
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 22 - 218
Target Start/End: Original strand, 5816910 - 5817125
Alignment:
| Q |
22 |
gtatagaatatgattatttattgaagaggaaaaatatatatataaataaatctctgaaatttaaaactttggggttgttaacatttttattttgtt---- |
117 |
Q |
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| T |
5816910 |
gtatagaatatgattatttattgaagaggaaaaatatatata--aataaatctctgaaatttaaaactttggggttgttaacatttttattttgttttaa |
5817007 |
T |
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| Q |
118 |
-----------------aaaataaaggcgaaagaataatcttatttttcagtcattgacacaattgaggaacgcttggttttgttttcgatcaattattc |
200 |
Q |
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| T |
5817008 |
aatttttattttgttttaaaataaaggggaaagaataatcttatttttcagtcattgacacagttgaggaacggttggttttgttttcgatcaattattc |
5817107 |
T |
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| Q |
201 |
aatgtgtaactatgcata |
218 |
Q |
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|||||||||||||||||| |
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| T |
5817108 |
aatgtgtaactatgcata |
5817125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 296 - 373
Target Start/End: Original strand, 5817203 - 5817288
Alignment:
| Q |
296 |
gtcgtcaaatttgaccagtctataacgaacttagcatatgataatatgata--------tatctacttagagtaaatatgtatgtg |
373 |
Q |
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| T |
5817203 |
gtcgtcaaatttgaccagtctataacgaacttagcatatgataatatgatatgttttattatctacttagagtaaatatgtatgtg |
5817288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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