View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_low_17 (Length: 372)
Name: NF12073_low_17
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_17 |
 | |
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| [»] chr4 (9 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 5348265 - 5348636
Alignment:
| Q |
1 |
ctgaagcctagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccat |
100 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5348265 |
ctgaagcctaactagtgaggaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccat |
5348364 |
T |
|
| Q |
101 |
tcttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctgcgaggttttgaataaacattgttatatttggctgctcaagtttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||| |
|
|
| T |
5348365 |
tcttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctgtgaggtttcgaataaacattgctatatttggctgctcaagtttta |
5348464 |
T |
|
| Q |
201 |
ggacgtgatgtgaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttccttggggatctgtcccttaaatccagcattgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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|
| T |
5348465 |
ggacgtgatgtgaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttccttagggatctgtcccttaaatccagcattgga |
5348564 |
T |
|
| Q |
301 |
caagttcagatacatcaaattttgtagcttatcaaagtcttgaggaatcacagaacgaaagtcattaaaagc |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5348565 |
caagttcagatacatcaaattttgtagcttatcaaagtcttgaggaatcacagaacgaaaatcattaaaagc |
5348636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 5425585 - 5425956
Alignment:
| Q |
1 |
ctgaagcctagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccat |
100 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| | | |||||||| |||||| |
|
|
| T |
5425585 |
ctgaagccttgctagcgaagaatcaataggtccagagagattgcatgatgacatgcttagaacacgaaggccccccaatggatataaagaacgaccccat |
5425684 |
T |
|
| Q |
101 |
tcttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctgcgaggttttgaataaacattgttatatttggctgctcaagtttta |
200 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||| |||||| ||||||||||||| || ||||| |||||||| ||||||||| | ||||||||| | |
|
|
| T |
5425685 |
tcttctccactggctgatattgctacaccatctagatacaattttgtgatatctgtgaagtttttcataaacatccctatatttggattctcaagtttga |
5425784 |
T |
|
| Q |
201 |
ggacgtgatgtgaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttccttggggatctgtcccttaaatccagcattgaa |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||| | ||| ||||| ||| | |
|
|
| T |
5425785 |
ggacgtgatgtgaagtaaatgaagaagacaaatcaagagtgaccaaccttttgaggtgaaaaatttccgtagggatctgtccttgaaagccagcgttgga |
5425884 |
T |
|
| Q |
301 |
caagttcagatacatcaaattttgtagcttatcaaagtcttgaggaatcacagaacgaaagtcattaaaagc |
372 |
Q |
| |
|
||||||| |||| ||||||| || || | || | |||||||| |||| |||| |||||||||| ||||| |
|
|
| T |
5425885 |
gaagttcaaatacctcaaattctgaagttgatgcagctcttgaggcatcatagaatgaaagtcatttaaagc |
5425956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 2 - 372
Target Start/End: Complemental strand, 5410907 - 5410537
Alignment:
| Q |
2 |
tgaagcctagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccatt |
101 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||| |||| |||| | | ||||||| |
|
|
| T |
5410907 |
tgaagcttagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcaaaacacgaagccccttcaataaagataaaggatgaccccatt |
5410808 |
T |
|
| Q |
102 |
cttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctgcgaggttttgaataaacattgttatatttggctgctcaagttttag |
201 |
Q |
| |
|
| ||||| || || |||||||| |||||||||| ||| || | ||| ||||||| |||||||| | || |||| ||||||||||| ||||||||||| |
|
|
| T |
5410807 |
cctctcccctagctgatattgcaacaccatctagatataattctgtaatatctgtaaggttttgcacaagcattcctatatttggcttctcaagttttaa |
5410708 |
T |
|
| Q |
202 |
gacgtgatgtgaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttccttggggatctgtcccttaaatccagcattgaac |
301 |
Q |
| |
|
| || ||||| ||||| ||| || ||||||||| ||||||||||||||||||||||||||||| || | |||||||||||| || ||||| || |
|
|
| T |
5410707 |
gttctgcagtgaaataaatttagaagaaaaatcaagaatgaccaaccttttgaggtgagaaatttcctccggaacctgtcccttaaagccggcattagac |
5410608 |
T |
|
| Q |
302 |
aagttcagatacatcaaattttgtagcttatcaaagtcttgaggaatcacagaacgaaagtcattaaaagc |
372 |
Q |
| |
|
||||| | |||| ||||||| |||||| ||| |||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
5410607 |
aagtttaaatacctcaaattatgtagcctatgcaagtcttgcggaatcacagaacgaaagtgattaaaagc |
5410537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 13 - 369
Target Start/End: Complemental strand, 5352784 - 5352428
Alignment:
| Q |
13 |
tagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccattcttctccgctg |
112 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||| || ||| || |||||| |||| ||| |||||| |||||||||| |
|
|
| T |
5352784 |
tagtgaagaatcaaaaggtccagagagattgcatgatgacatgctcaaaacacgaagacccttcagtgaagataaagcacgaacccatttttctccgctg |
5352685 |
T |
|
| Q |
113 |
gcagatattgctacaccatctaaatacaactttgtgatatctgcgaggttttgaataaacattgt-tatatttggctgctcaagttttaggacgtgatgt |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||| | ||||||||||| |||||||| | ||| | | | ||||||||| | ||||||||||| | |||||| |
|
|
| T |
5352684 |
gcagatattgctacaccatctagatacaattctgtgatatctgtgaggtttttca-aaagagtctctatatttggattctcaagttttatgttctgatgt |
5352586 |
T |
|
| Q |
212 |
gaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttccttggggatctgtcccttaaatccagcattgaacaagttcagat |
311 |
Q |
| |
|
||||||| | |||| ||||||||||||| ||||||||| | |||||||||||||| || |||| || |||| ||| ||||||| | ||||| |||| |
|
|
| T |
5352585 |
gaagtaattaaagaagacaaatcaagagtaaccaaccttgtaaggtgagaaatttctttcgggacttgaccctcaaagccagcatcagaaaagttgagat |
5352486 |
T |
|
| Q |
312 |
acatcaaattttgtagcttatcaaagtcttgaggaatcacagaacgaaagtcattaaa |
369 |
Q |
| |
|
|| ||||||||| ||||||| ||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5352485 |
acctcaaatttttcagcttatgcaagtctttaggaatcacagaatgaaagtcattaaa |
5352428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 355
Target Start/End: Complemental strand, 5500662 - 5500308
Alignment:
| Q |
1 |
ctgaagcctagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccat |
100 |
Q |
| |
|
||||||| || ||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || || | || ||||| |||| ||| |||||| |
|
|
| T |
5500662 |
ctgaagcttacctaatgaagaatcaatgggtccagagagattgcatgatgacatgctcagaacacgaagaccttctaacgaagataaagcacgaccccat |
5500563 |
T |
|
| Q |
101 |
tcttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctgcgaggttttgaataaacattgttatatttggctgctcaagtttta |
200 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||| || | ||||||||| | || |||||| | || |||||| |||||||||| | |||||||| |
|
|
| T |
5500562 |
tcctctccgctggcagatattgctacaccatctaaatataattctgtgatatcggtgaagttttgcacaagcattgtaatatttggcttcctaagtttta |
5500463 |
T |
|
| Q |
201 |
ggacgtgatgtgaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttccttggggatctgtcccttaaatccagcattgaa |
300 |
Q |
| |
|
|| ||||| |||||||| |||||| |||| ||||||| || |||||| | |||||||||||||| | |||| ||| |||| ||| ||||||| | |
|
|
| T |
5500462 |
ggctgtgatctgaagtaattgaagaagacatatcaagaataactaaccttgttaggtgagaaatttcttctgggacctgcccctcaaagccagcatcaga |
5500363 |
T |
|
| Q |
301 |
caagttcagatacatcaaattttgtagcttatcaaagtcttgaggaatcacagaa |
355 |
Q |
| |
|
||||||||||||| ||||||| || || |||| | || ||||||||||||||| |
|
|
| T |
5500362 |
caagttcagatacctcaaattctgcagtttatacatctcatgaggaatcacagaa |
5500308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 5377142 - 5376822
Alignment:
| Q |
1 |
ctgaagcctagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||| ||| ||||||||||| || |||||| ||| |||||| | ||| ||||| |||| |||| ||| |||||| |
|
|
| T |
5377142 |
ctgaagcttagctagtgaagaatcaatagctcctgagagattgcacgacgacatggtcaaaacacgaacaccctccaataaagataaagcacgaccccat |
5377043 |
T |
|
| Q |
101 |
tcttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctgcgaggttttgaataaacattgttatatttggctgctcaagtttta |
200 |
Q |
| |
|
|| |||||||||| ||||||||||||||| |||| |||||| | ||||||||||| ||||||| | || |||| ||||||||| | ||||||||||| |
|
|
| T |
5377042 |
tcatctccgctggaagatattgctacaccgtctagatacaattctgtgatatctgtaaggtttttcacaagcatttctatatttggattctcaagtttta |
5376943 |
T |
|
| Q |
201 |
ggacgtgatgtgaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttccttggggatctgtcccttaaatccagcattgaa |
300 |
Q |
| |
|
|| ||| ||||||||| | |||| ||||||||||||| ||||||||| | ||||||| |||||| || |||| ||| |||| ||| ||||||| | |
|
|
| T |
5376942 |
ggctttgacgtgaagtaattaaagaagacaaatcaagagtaaccaaccttgtaaggtgagcaatttcttttgggacctgcccctcaaagccagcatcaga |
5376843 |
T |
|
| Q |
301 |
caagttcagatacatcaaatt |
321 |
Q |
| |
|
|||||| |||||| ||||||| |
|
|
| T |
5376842 |
caagttgagatacctcaaatt |
5376822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 2 - 267
Target Start/End: Complemental strand, 5391461 - 5391196
Alignment:
| Q |
2 |
tgaagcctagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccatt |
101 |
Q |
| |
|
|||||| || ||||||| |||||||||||||||||||||||||| ||||||||||| | |||||| || ||| |||| ||||| |||| ||| ||||||| |
|
|
| T |
5391461 |
tgaagcttaactagtgacgaatcaataggtccagagagattgcaggatgacatgcttaaaacacgaagaccctccaaagaagataaagcacgaccccatt |
5391362 |
T |
|
| Q |
102 |
cttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctgcgaggttttgaataaacattgttatatttggctgctcaagttttag |
201 |
Q |
| |
|
| |||||||||| | ||||||| |||||||||| |||||| | | |||||| || |||||||| | || || | |||||| ||| |||||||||| |
|
|
| T |
5391361 |
cctctccgctggtacatattgccacaccatctagatacaattctatgatatttgtgaggtttttcacaagtatcgccatattttgctttgcaagttttag |
5391262 |
T |
|
| Q |
202 |
gacgtgatgtgaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttc |
267 |
Q |
| |
|
| ||||||||| |||| | ||| ||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
5391261 |
gctctgatgtgaaataaacgtagatgacaaatcaagagtaaccaaccttgtgaggtgagaaatttc |
5391196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 5399924 - 5399770
Alignment:
| Q |
1 |
ctgaagcctagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccat |
100 |
Q |
| |
|
||||||||| ||||| ||| ||| ||||||||||||||||||| ||||||||||||||| |||| || |||||||||| | | |||||||| |||||| |
|
|
| T |
5399924 |
ctgaagccttgctagcgaaaaatggataggtccagagagattgcttgatgacatgctcagcacacaaagcccccccaatggatataaagaacgaccccat |
5399825 |
T |
|
| Q |
101 |
tcttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctg |
155 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
5399824 |
tcttctgcgctggctgatattgctacaccatctagatacaattttgtgatatctg |
5399770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 282
Target Start/End: Complemental strand, 5399552 - 5399511
Alignment:
| Q |
241 |
gaccaaccttttgaggtgagaaatttccttggggatctgtcc |
282 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
5399552 |
gaccaaccttttgaggtgaaaaatttccttagggatctgtcc |
5399511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 20327318 - 20326998
Alignment:
| Q |
1 |
ctgaagcctagctagtgaagaatcaataggtccagagagattgcatgatgacatgctcagaacacggagtccccccaatgaagacaaagaacggccccat |
100 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||| | ||| ||||| |||| |||| ||| ||||| |
|
|
| T |
20327318 |
ctgaagcttagctagtgaagaatcaataggtcctgagagattgcacgacgacatgctcaaaacacgaacaccctccaataaagataaagcacgaccccac |
20327219 |
T |
|
| Q |
101 |
tcttctccgctggcagatattgctacaccatctaaatacaactttgtgatatctgcgaggttttgaataaacattgttatatttggctgctcaagtttta |
200 |
Q |
| |
|
|| |||||||||| ||||||||||||||| |||| |||||| | ||||||||||| ||||||| | || |||| ||||||||| | ||||||||||| |
|
|
| T |
20327218 |
tcatctccgctggaagatattgctacaccgtctagatacaattctgtgatatctgtaaggtttttcacaagcatttctatatttggattctcaagtttta |
20327119 |
T |
|
| Q |
201 |
ggacgtgatgtgaagtaaatgaagacgacaaatcaagagagaccaaccttttgaggtgagaaatttccttggggatctgtcccttaaatccagcattgaa |
300 |
Q |
| |
|
|| ||| ||||||||| | |||| ||||||||||||| ||||||||| | ||||||| |||||| || |||| ||| ||| ||| ||||||| | |
|
|
| T |
20327118 |
ggttttgacgtgaagtaattaaagaagacaaatcaagagtaaccaaccttgtaaggtgagcaatttcttttgggacctgctcctcaaagccagcatcaga |
20327019 |
T |
|
| Q |
301 |
caagttcagatacatcaaatt |
321 |
Q |
| |
|
|||||| |||||| ||||||| |
|
|
| T |
20327018 |
caagttgagatacctcaaatt |
20326998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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