View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12073_low_19 (Length: 342)

Name: NF12073_low_19
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12073_low_19
NF12073_low_19
[»] chr5 (15 HSPs)
chr5 (19-335)||(38169326-38169638)
chr5 (19-335)||(38197466-38197778)
chr5 (143-335)||(38187978-38188169)
chr5 (143-335)||(38210188-38210379)
chr5 (19-205)||(38453425-38453603)
chr5 (163-335)||(38182962-38183133)
chr5 (163-335)||(38215224-38215394)
chr5 (225-335)||(38183208-38183318)
chr5 (225-335)||(38215039-38215149)
chr5 (214-335)||(38443102-38443223)
chr5 (136-335)||(38185239-38185427)
chr5 (136-335)||(38212930-38213118)
chr5 (256-328)||(38453279-38453349)
chr5 (19-103)||(38187919-38187997)
chr5 (19-103)||(38210360-38210438)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 335
Target Start/End: Original strand, 38169326 - 38169638
Alignment:
Q  19 tgattcccctagtttttgggaaattcagttaatccaactatatatattgccttacgtgaatcatatagttaatcaaatacttatagga---taagtctgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| |  |||||||||||||||||||||   |||||||||    
T  38169326 tgattcccctagtttttgggaaattcagttaatccaactatat----tgccttacgtgaatcaca--gttaatcaaatacttataggaggataagtctgt 38169419  T
Q  116 ggtattaattctagtacttaggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||    
T  38169420 ggtattaattctagtacttaggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcatatagtt-aaaaaacac 38169518  T
Q  216 agtttcacccgtcttttttggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtg 315  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38169519 agtttcacccgtcttttctcgaaccctctttacactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatggtg 38169618  T
Q  316 gaaaaatccaacctatgctt 335  Q
    ||||||||||||||| ||||    
T  38169619 gaaaaatccaacctaggctt 38169638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 335
Target Start/End: Complemental strand, 38197778 - 38197466
Alignment:
Q  19 tgattcccctagtttttgggaaattcagttaatccaactatatatattgccttacgtgaatcatatagttaatcaaatacttatagga---taagtctgt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||| |  |||||||||||||||||||||   |||||||||    
T  38197778 tgattcccctagtttttgggaaattcagttaatccaactatat----tgccttacgtgaatcaca--gttaatcaaatacttataggaggataagtctgt 38197685  T
Q  116 ggtattaattctagtacttaggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncac 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||       |||    
T  38197684 ggtattaattctagtacttaggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcatatagtt-aaaaaacac 38197586  T
Q  216 agtttcacccgtcttttttggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtg 315  Q
    ||||||||||||||||| | ||||||||||| |||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38197585 agtttcacccgtcttttctcgaaccctctttacactctcagtaccctctctaaacactttcaaacgatggagagagtcaagctcatgattacctatggtg 38197486  T
Q  316 gaaaaatccaacctatgctt 335  Q
    ||||||||||||||| ||||    
T  38197485 gaaaaatccaacctaggctt 38197466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 143 - 335
Target Start/End: Original strand, 38187978 - 38188169
Alignment:
Q  143 cagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||    
T  38187978 cagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttaaaaaa-cacagtttcacccgtcttttctcgaaccct 38188076  T
Q  243 cttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaacctatgctt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38188077 cttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggctt 38188169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 143 - 335
Target Start/End: Complemental strand, 38210379 - 38210188
Alignment:
Q  143 cagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccct 242  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||    
T  38210379 cagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagttaaaaaa-cacagtttcacccgtcttttctcgaaccct 38210281  T
Q  243 cttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaacctatgctt 335  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38210280 cttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggctt 38210188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 19 - 205
Target Start/End: Complemental strand, 38453603 - 38453425
Alignment:
Q  19 tgattcccctagtttttgggaaattcagttaatccaactatatatattgccttacgtgaatcatatagttaatcaaatacttataggataagtctgtggt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||    ||||| ||||||||||||  ||||||||||||||||||||||| |||||  ||    
T  38453603 tgattcccctagtttttgggaaattcagttaatccaactatat----tgcctaacgtgaatcata--gttaatcaaatacttataggatatgtctg--gt 38453512  T
Q  119 attaattctagtacttaggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcacatcacatagtt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  38453511 attaattctagtacttaggaaattcagttaatcaaatacttataaatactgaactgctcacaattcccatattcacatcacatagtt 38453425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 163 - 335
Target Start/End: Complemental strand, 38183133 - 38182962
Alignment:
Q  163 aatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccctcttttcactctcagtaccct 262  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  38183133 aatactgaactgctcacaattcacatattcacatcacatagttaaaaaa-cacagtttcacccgtcttttctcgaaccctcttttcactctcagtaccct 38183035  T
Q  263 ctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaacctatgctt 335  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38183034 ctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatccaacctaggctt 38182962  T

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Target: chr5; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 163 - 335
Target Start/End: Original strand, 38215224 - 38215394
Alignment:
Q  163 aatactgaactgctcacaattcacatattcacatcacatagttnnnnnnncacagtttcacccgtcttttttggaaccctcttttcactctcagtaccct 262  Q
    |||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||| | |||||||||||||||||||||||||||    
T  38215224 aatactgaactgctcacaattcacatattcacatcacatagttaaaaaa-cacagtttcacccgtcttttcttgaaccctcttttcactctcagtaccct 38215322  T
Q  263 ctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaacctatgctt 335  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||    
T  38215323 ctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtgg-aaaatccaacctaggctt 38215394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 38183208 - 38183318
Alignment:
Q  225 cgtcttttttggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatcc 324  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38183208 cgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatcc 38183307  T
Q  325 aacctatgctt 335  Q
    |||||| ||||    
T  38183308 aacctaggctt 38183318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 225 - 335
Target Start/End: Complemental strand, 38215149 - 38215039
Alignment:
Q  225 cgtcttttttggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatcc 324  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38215149 cgtcttttctcgaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacctatggtggaaaaatcc 38215050  T
Q  325 aacctatgctt 335  Q
    |||||| ||||    
T  38215049 aacctaggctt 38215039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 214 - 335
Target Start/End: Original strand, 38443102 - 38443223
Alignment:
Q  214 acagtttcacccgtcttttttggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatgg 313  Q
    ||||||||| ||||||||| | |||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  38443102 acagtttcatccgtcttttctcgaaccctcttttcattctcaataccctctcaaaacactttcaaacgatggagagagtcaagctcatgattacttatgg 38443201  T
Q  314 tggaaaaatccaacctatgctt 335  Q
    |||| |||||||||||| ||||    
T  38443202 tggagaaatccaacctaggctt 38443223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 136 - 335
Target Start/End: Original strand, 38185239 - 38185427
Alignment:
Q  136 ggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcaca--tcacatagttnnnnnnncacagtttcacccgtcttttt 233  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||||  || ||             || ||||||  ||||||||     
T  38185239 ggaaattcagttaattaaatacttataaatattggactgctcacaattcacgtattcacacgtccca-------------actgtttcagacgtcttttc 38185325  T
Q  234 tggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaacctatgc 333  Q
    | ||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| ||    
T  38185326 tcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattacctatggtgcaaaaatccaacctaggc 38185425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 136 - 335
Target Start/End: Complemental strand, 38213118 - 38212930
Alignment:
Q  136 ggaaattcagttaatcaaatacttataaatactgaactgctcacaattcacatattcaca--tcacatagttnnnnnnncacagtttcacccgtcttttt 233  Q
    ||||||||||||||| ||||||||||||||| || |||||||||||||||| ||||||||  || ||             || ||||||  ||||||||     
T  38213118 ggaaattcagttaattaaatacttataaatattggactgctcacaattcacgtattcacacgtccca-------------actgtttcagacgtcttttc 38213032  T
Q  234 tggaaccctcttttcactctcagtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaacctatgc 333  Q
    | ||| ||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||| ||    
T  38213031 tcgaatcctattttcactctcagtaccctctcaaaacactttcaaactatggagagagtcaagctcatgattacctatggtgcaaaaatccaacctaggc 38212932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 256 - 328
Target Start/End: Complemental strand, 38453349 - 38453279
Alignment:
Q  256 gtaccctctcaaaacactttcaaacgatggacagagtcaagctcatgattacctatggtggaaaaatccaacc 328  Q
    |||||||||||||||  |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||    
T  38453349 gtaccctctcaaaac--tttcaaacgatggagagagtcaagttcatgattacctatggtggaaaaatccaacc 38453279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 38187919 - 38187997
Alignment:
Q  19 tgattcccctagtttttgggaaattcagttaatccaactatatatattgccttacgtgaatcatatagttaatcaaatacttata 103  Q
    ||||||||||||||||| ||||||||||||||||||||    ||||||||||||||||||||  | |||||||||||||||||||    
T  38187919 tgattcccctagtttttaggaaattcagttaatccaac----tatattgccttacgtgaatc--acagttaatcaaatacttata 38187997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 38210438 - 38210360
Alignment:
Q  19 tgattcccctagtttttgggaaattcagttaatccaactatatatattgccttacgtgaatcatatagttaatcaaatacttata 103  Q
    ||||||||||||||||| |||||||||||||||||||||    |||||||||||||||||||  | |||||||||||||||||||    
T  38210438 tgattcccctagtttttaggaaattcagttaatccaact----atattgccttacgtgaatc--acagttaatcaaatacttata 38210360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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