View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_low_22 (Length: 302)
Name: NF12073_low_22
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 56 - 266
Target Start/End: Complemental strand, 17582161 - 17581951
Alignment:
| Q |
56 |
tgcagttaccatattggatgagaaagcaaaactcttgaaccatcattttttattttgatttaattcagatatacctttcactgtaaacannnnnnnatac |
155 |
Q |
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| T |
17582161 |
tgcagttaccatattggatgagaaagcaaaactcttgaactatcattttttattttgatttaattcagatatacctttcactgtaaacatttttttataa |
17582062 |
T |
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| Q |
156 |
cgacagtcaatcgtaacagtttgatgatgaaaactccttgcctaataaaattatcaggcaaggacagacctctcatcagtcatcataaaattatctaact |
255 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17582061 |
cgacggtcaatcgtaacagtttgatgatgaaaactccttgcctaataaaattatcaggcaaggacagacctctcatcagtcatcataaaattatctaact |
17581962 |
T |
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| Q |
256 |
tggcatattta |
266 |
Q |
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| T |
17581961 |
tagcatattta |
17581951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 5e-62; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 14745147 - 14745292
Alignment:
| Q |
1 |
ctatcttaggggcaacctccaaaatggcttgcttttcaagtgaggtagactagactgcagttaccat----attggatgagaaagcaaaactcttgaacc |
96 |
Q |
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| T |
14745147 |
ctatcttaggggcaacctccaaaatggcttgcttttcaagtgaggtagactagactacagttaccatgcatattgcatgagaaagcaaaactcttgaacc |
14745246 |
T |
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| Q |
97 |
atcattttttattttgatttaattcagatatacctttcactgtaaa |
142 |
Q |
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| T |
14745247 |
atcattttttattttgatttaattcagatatacctttcactgtaaa |
14745292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Complemental strand, 53896391 - 53896354
Alignment:
| Q |
161 |
gtcaatcgtaacagtttgatgatgaaaactccttgcct |
198 |
Q |
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| T |
53896391 |
gtcaatcgtaacagtttgttggtgaaaactccttgcct |
53896354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 138
Target Start/End: Complemental strand, 53896445 - 53896417
Alignment:
| Q |
110 |
ttgatttaattcagatatacctttcactg |
138 |
Q |
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| T |
53896445 |
ttgatttaattcagatatacctttcactg |
53896417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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