View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_low_25 (Length: 284)
Name: NF12073_low_25
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 15)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 38169738 - 38170008
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
38169738 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccaatttataacgaagaagatctcaatc |
38169837 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38169838 |
atattatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38169937 |
T |
|
| Q |
206 |
tgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
38169938 |
ttttgattctttggcttccgtcaaatcgctcaatttcgttcgagtttctccttttgaagaatattcatctc |
38170008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 38182862 - 38182592
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38182862 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38182763 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38182762 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38182663 |
T |
|
| Q |
206 |
tgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
38182662 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38182592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 38188269 - 38188539
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188269 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38188368 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38188369 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38188468 |
T |
|
| Q |
206 |
tgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
38188469 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38188539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 38210088 - 38209818
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38210088 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38209989 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38209988 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38209889 |
T |
|
| Q |
206 |
tgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
38209888 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38209818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 38215494 - 38215764
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215494 |
ctttccacgttcatgttttccgatgtttgtttcaagtatcaactccttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38215593 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38215594 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
38215693 |
T |
|
| Q |
206 |
tgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
38215694 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38215764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 276
Target Start/End: Original strand, 38185527 - 38185797
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185527 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38185626 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185627 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatc |
38185726 |
T |
|
| Q |
206 |
tgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
38185727 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38185797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 38212830 - 38212560
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38212830 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactacttggtgaagatttggatgctttgatcccagtttataacgaagaagatctcaatc |
38212731 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38212730 |
atatgatgttcgagtatgatcgtatgtgtcgcttttcacaaaagcctgcatggttgagagtcttcctcttcccggtccctattaacaacaacaaggcatc |
38212631 |
T |
|
| Q |
206 |
tgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
| |||||||||||||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
38212630 |
ttttgattctttggcttccgtcgactcgctcaattccgttcaagtttttccttttgaagaatattcatctc |
38212560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 38453172 - 38452902
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38453172 |
ctttccatattcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccggtttataacgaagaagatctcaatc |
38453073 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | ||||||||||||||||||| |
|
|
| T |
38453072 |
atatgatgttagagtatgatcatatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccttgttaacaacaacaaggcatc |
38452973 |
T |
|
| Q |
206 |
tgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
| |||||||||| |||||||| | ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
38452972 |
ttttgattctttaacttccgtcgactcgctcaattccgttcaagtttctccttttgaagaatattcatctc |
38452902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 6 - 223
Target Start/End: Original strand, 38443323 - 38443540
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatc |
105 |
Q |
| |
|
|||||| | |||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38443323 |
ctttcctcattcatggtttccaatgtttgcttcaagtatcaactccttggtgaagattttgatgctttgatcccagtttataacgaagaagatctcaatc |
38443422 |
T |
|
| Q |
106 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
38443423 |
atatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggttgagggtcttcctcttccctgtccctgttaacaacaacaaggcatc |
38443522 |
T |
|
| Q |
206 |
tgttgattctttggcttc |
223 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
38443523 |
ttttgattctttggcttc |
38443540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 97 - 276
Target Start/End: Original strand, 38219947 - 38220126
Alignment:
| Q |
97 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcacttttcacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaa |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38219947 |
atctcaatcatatgatgttcgagtatgatcgtatgtgtcgcttttcacgaaagcctgcatggttgagggtcttcctcttcccggtccctattaacaacaa |
38220046 |
T |
|
| Q |
197 |
caaggcatctgttgattctttggcttccgtcaaatcgctcaattctgttcaagtttctccttttgaagaatattcatctc |
276 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
38220047 |
caaggcatcttttgattctttggcttccatcaaatcgctcaattccgttcaagtctctccttttgaagaatattcatctc |
38220126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 224
Target Start/End: Original strand, 38155845 - 38156027
Alignment:
| Q |
42 |
tatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgatcgtatgtgtcactttt |
141 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||||||| | |||||| | ||| ||||| |
|
|
| T |
38155845 |
tatcaactccttggtgaagatctcgatgctttgattccggtttataacgaagaagatcttgatcatatgatgttcgagaacgatcgtttatgttgctttt |
38155944 |
T |
|
| Q |
142 |
cacgaaagcctgcatggctgagggtcttcctcttcccggtccctattaacaacaacaaggcatctgttgattctttggcttcc |
224 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||| ||||||||| |||||||||||||||| || |||||||||||||| |
|
|
| T |
38155945 |
cacgaaagcctgcaaagttgagggtcttcctcttccctctccctattagcaacaacaaggcatcttttaattctttggcttcc |
38156027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 38183418 - 38183479
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38183418 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
38183479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 38214939 - 38214878
Alignment:
| Q |
6 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
67 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38214939 |
ctttccacgttcatgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcga |
38214878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 28341024 - 28341142
Alignment:
| Q |
17 |
catgttttccgatgtttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttc |
116 |
Q |
| |
|
||||||| | |||| |||||||||||| || |||| |||||||||| | ||| ||||||| | ||| | ||||| || |||||| | |||||||| || |
|
|
| T |
28341024 |
catgtttgctgatgcttgcttcaagtaccagctccctggtgaagatcttaatgatttgatctccgttcacaacgatgatgatctcgaaaatatgatggtc |
28341123 |
T |
|
| Q |
117 |
gagtatgatcgtatgtgtc |
135 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
28341124 |
gagtatgatcgtatgtgtc |
28341142 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 28399676 - 28399582
Alignment:
| Q |
31 |
tttgcttcaagtatcaactccttggtgaagatttcgatgctttgatcccagtttataacgaagaagatctcaatcatatgatgttcgagtatgat |
125 |
Q |
| |
|
||||||||||||||||||| | |||| ||||| ||||| ||||||||||||| | ||| | |||||| | || ||||||||||| |||||||| |
|
|
| T |
28399676 |
tttgcttcaagtatcaacttcctggtcaagatctcgatactttgatcccagtcttaaaccaggaagatttggatgatatgatgttcaagtatgat |
28399582 |
T |
|
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