View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12073_low_28 (Length: 252)

Name: NF12073_low_28
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12073_low_28
NF12073_low_28
[»] chr8 (16 HSPs)
chr8 (41-243)||(5816689-5816911)
chr8 (1-38)||(18111730-18111767)
chr8 (1-38)||(23487309-23487346)
chr8 (1-38)||(23687919-23687956)
chr8 (1-38)||(26016814-26016851)
chr8 (1-38)||(32522598-32522635)
chr8 (1-38)||(39029422-39029459)
chr8 (1-38)||(110319-110356)
chr8 (1-38)||(2944027-2944064)
chr8 (1-38)||(5783900-5783937)
chr8 (1-38)||(8797042-8797079)
chr8 (1-38)||(25058287-25058324)
chr8 (1-38)||(28965713-28965750)
chr8 (1-38)||(38780895-38780932)
chr8 (1-38)||(40785137-40785174)
chr8 (1-38)||(44888927-44888964)
[»] chr1 (22 HSPs)
chr1 (1-38)||(14171776-14171813)
chr1 (1-38)||(6089980-6090017)
chr1 (1-38)||(9413080-9413117)
chr1 (1-38)||(35693311-35693348)
chr1 (1-38)||(41855228-41855265)
chr1 (1-35)||(15100609-15100643)
chr1 (1-35)||(15111832-15111866)
chr1 (1-39)||(26544460-26544498)
chr1 (1-39)||(41317839-41317877)
chr1 (1-38)||(4102469-4102506)
chr1 (1-38)||(11351455-11351492)
chr1 (1-38)||(25284053-25284090)
chr1 (1-38)||(27037516-27037553)
chr1 (1-38)||(28052436-28052473)
chr1 (1-38)||(28885856-28885893)
chr1 (1-38)||(34931324-34931361)
chr1 (1-38)||(36695101-36695138)
chr1 (1-38)||(36711202-36711239)
chr1 (1-38)||(40614660-40614697)
chr1 (1-38)||(44529428-44529465)
chr1 (1-38)||(51561084-51561121)
chr1 (1-38)||(52602236-52602273)
[»] chr6 (13 HSPs)
chr6 (1-39)||(33773826-33773864)
chr6 (1-38)||(925688-925725)
chr6 (1-38)||(13866840-13866877)
chr6 (1-38)||(15498874-15498911)
chr6 (1-38)||(19097556-19097593)
chr6 (1-38)||(31150001-31150038)
chr6 (1-38)||(8670380-8670417)
chr6 (1-38)||(9660147-9660184)
chr6 (1-38)||(11847818-11847855)
chr6 (1-38)||(31091690-31091727)
chr6 (1-37)||(1147023-1147059)
chr6 (1-33)||(34126386-34126418)
chr6 (2-38)||(34915296-34915332)
[»] scaffold0604 (1 HSPs)
scaffold0604 (1-38)||(3539-3576)
[»] scaffold0237 (1 HSPs)
scaffold0237 (1-38)||(6365-6402)
[»] chr7 (14 HSPs)
chr7 (1-38)||(33381372-33381409)
chr7 (1-38)||(35569407-35569444)
chr7 (1-38)||(42298181-42298218)
chr7 (1-38)||(1574964-1575001)
chr7 (1-38)||(12930565-12930602)
chr7 (1-38)||(19920807-19920844)
chr7 (1-38)||(23109314-23109351)
chr7 (1-38)||(26843018-26843055)
chr7 (1-38)||(27529473-27529510)
chr7 (1-38)||(32759803-32759840)
chr7 (1-38)||(43279949-43279986)
chr7 (1-38)||(45907490-45907527)
chr7 (1-37)||(2289770-2289806)
chr7 (1-37)||(11647590-11647626)
[»] chr5 (13 HSPs)
chr5 (1-38)||(26889607-26889644)
chr5 (1-35)||(18615818-18615852)
chr5 (1-35)||(23285284-23285318)
chr5 (1-38)||(4194925-4194962)
chr5 (1-38)||(7940697-7940734)
chr5 (1-38)||(9020940-9020977)
chr5 (1-38)||(14436049-14436086)
chr5 (1-38)||(14649432-14649469)
chr5 (1-38)||(14913894-14913931)
chr5 (1-38)||(16441176-16441213)
chr5 (1-38)||(20142014-20142051)
chr5 (1-38)||(20186748-20186785)
chr5 (1-38)||(43060164-43060201)
[»] chr4 (20 HSPs)
chr4 (1-38)||(13620609-13620646)
chr4 (1-37)||(48030558-48030594)
chr4 (1-37)||(52850208-52850244)
chr4 (1-35)||(30049840-30049874)
chr4 (1-38)||(17339325-17339362)
chr4 (1-38)||(23777557-23777594)
chr4 (1-38)||(26625757-26625794)
chr4 (1-38)||(36991161-36991198)
chr4 (1-38)||(39879984-39880021)
chr4 (1-38)||(47683335-47683372)
chr4 (1-38)||(49373448-49373485)
chr4 (1-38)||(49489894-49489931)
chr4 (1-38)||(50450978-50451015)
chr4 (1-38)||(54877769-54877806)
chr4 (1-38)||(56432766-56432803)
chr4 (1-37)||(6462445-6462481)
chr4 (1-37)||(18882600-18882636)
chr4 (1-37)||(37776490-37776526)
chr4 (1-37)||(40809803-40809839)
chr4 (1-37)||(55876625-55876661)
[»] chr3 (22 HSPs)
chr3 (1-38)||(10015544-10015581)
chr3 (1-38)||(19897591-19897628)
chr3 (1-38)||(20621439-20621476)
chr3 (1-38)||(21459229-21459266)
chr3 (1-38)||(31187003-31187040)
chr3 (1-38)||(32978726-32978763)
chr3 (1-38)||(1450489-1450526)
chr3 (1-38)||(6784709-6784746)
chr3 (1-38)||(12050148-12050185)
chr3 (1-38)||(15996528-15996565)
chr3 (1-38)||(42801535-42801572)
chr3 (1-38)||(46049741-46049778)
chr3 (1-38)||(47067181-47067218)
chr3 (1-38)||(49543879-49543916)
chr3 (1-38)||(50726539-50726576)
chr3 (1-38)||(50786272-50786309)
chr3 (1-38)||(52044734-52044771)
chr3 (1-37)||(13809563-13809599)
chr3 (1-37)||(14759081-14759117)
chr3 (1-37)||(17698788-17698824)
chr3 (1-37)||(45513391-45513427)
chr3 (1-33)||(48887704-48887736)
[»] chr2 (18 HSPs)
chr2 (1-38)||(2060563-2060600)
chr2 (1-38)||(7531848-7531885)
chr2 (1-38)||(12889963-12890000)
chr2 (1-38)||(15227904-15227941)
chr2 (1-38)||(15435598-15435635)
chr2 (1-38)||(23465380-23465417)
chr2 (1-38)||(40788843-40788880)
chr2 (1-39)||(40607949-40607987)
chr2 (1-38)||(2200226-2200263)
chr2 (1-38)||(19034657-19034694)
chr2 (1-38)||(22182678-22182715)
chr2 (1-38)||(24345664-24345701)
chr2 (1-38)||(31751319-31751356)
chr2 (1-38)||(40680418-40680455)
chr2 (1-38)||(41004188-41004225)
chr2 (1-37)||(7933667-7933703)
chr2 (1-37)||(12296182-12296218)
chr2 (2-38)||(34113773-34113809)
[»] scaffold0240 (1 HSPs)
scaffold0240 (1-38)||(18742-18779)
[»] scaffold0107 (1 HSPs)
scaffold0107 (1-38)||(48900-48937)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-38)||(19712-19749)
[»] scaffold0674 (1 HSPs)
scaffold0674 (1-33)||(5396-5428)
[»] scaffold0549 (1 HSPs)
scaffold0549 (1-33)||(9942-9974)
[»] scaffold0457 (1 HSPs)
scaffold0457 (1-37)||(4419-4455)


Alignment Details
Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 41 - 243
Target Start/End: Complemental strand, 5816911 - 5816689
Alignment:
Q  41 acatattaaatactaaatttaaatatctc--atagttaaagtttcaaatgttg----------ctatgagagttaacctaacgcattttgttgaaaacaa 128  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||          |||||||||||||| ||||||||| | || |||||||    
T  5816911 acatattaaatactaaatttaaatatctctcatagttaaagtttcaaatgttgattcgatatgctatgagagttaacttaacgcattctattaaaaacaa 5816812  T
Q  129 tccctctttattttcaaactttttgtatgtga------ttatttgtgtgtaattgcgaagactaacccgcatta-ggtggcactttggtattattca-tt 220  Q
    ||||||||||||| ||||||||||||||||||      |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||    
T  5816811 tccctctttatttccaaactttttgtatgtgactcagattatttgtgtgtaattgcgaagactaacccgcattagggtggcaatttggtattattcattt 5816712  T
Q  221 ttgcatactactcctcttctctg 243  Q
    |||||||||||||||||| ||||    
T  5816711 ttgcatactactcctcttttctg 5816689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 18111767 - 18111730
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  18111767 taattcccgttattttttcaaaagggtcctataattag 18111730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23487309 - 23487346
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  23487309 taattcccgttattttttcaaaagggtcctataattag 23487346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23687956 - 23687919
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  23687956 taattcccgttattttttcaaaagggtcctataattag 23687919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26016814 - 26016851
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  26016814 taattcccgttattttttcaaaagggtcctataattag 26016851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32522635 - 32522598
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  32522635 taattcccgttattttttcaaaagggtcctataattag 32522598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39029422 - 39029459
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  39029422 taattcccgttattttttcaaaagggtcctataattag 39029459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 110319 - 110356
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||| | |||||||||||||||||||||||||||    
T  110319 taattcccattattttttcaaaagggtcctataattag 110356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 2944064 - 2944027
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  2944064 taattcccgttatttttttaaaagggtcctataattag 2944027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 5783937 - 5783900
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  5783937 taattcccgttattttttcaaaagggccctataattag 5783900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8797079 - 8797042
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  8797079 taattcccgttattttttcaaaagggtcttataattag 8797042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25058287 - 25058324
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  25058287 taattcccgttattttttcaaaagggccctataattag 25058324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28965713 - 28965750
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  28965713 taattcccgttattttttcaaaagggtcttataattag 28965750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38780932 - 38780895
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  38780932 taattcccgttattttttcaaaagggccctataattag 38780895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40785137 - 40785174
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  40785137 taattcccgttattttttcaaaagggtcttataattag 40785174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 44888927 - 44888964
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  44888927 taattcccgttattttttcaaaagagtcctataattag 44888964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14171776 - 14171813
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14171776 taattcccgtaattttttcaaaagggtcctataattag 14171813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6089980 - 6090017
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6089980 taattcccgttattttttcaaaagggtcctataattag 6090017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9413117 - 9413080
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  9413117 taattcccgttattttttcaaaagggtcctataattag 9413080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 35693311 - 35693348
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  35693311 taattcccgttattttttcaaaagggtcctataattag 35693348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 41855265 - 41855228
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  41855265 taattcccgttattttttcaaaagggtcctataattag 41855228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15100609 - 15100643
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  15100609 taattcccgttattttttcaaaagggtcctataat 15100643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 15111832 - 15111866
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  15111832 taattcccgttattttttcaaaagggtcctataat 15111866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 26544460 - 26544498
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattaga 39  Q
    |||||||||| || |||||||||||||||||||||||||    
T  26544460 taattcccgttatgttttcaaaagggtcctataattaga 26544498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 41317839 - 41317877
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattaga 39  Q
    |||||||||| ||||||||||||||| ||||||||||||    
T  41317839 taattcccgttattttttcaaaagggccctataattaga 41317877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 4102506 - 4102469
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  4102506 taattcccgttattttttcaaaagggccctataattag 4102469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 11351492 - 11351455
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  11351492 taattcccgttattttttcaaaagagtcctataattag 11351455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 25284053 - 25284090
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  25284053 taattcccgttattttttcaaaaggatcctataattag 25284090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27037516 - 27037553
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  27037516 taattcccgttattttttcaaaagggtcttataattag 27037553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28052436 - 28052473
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||||| |||||||    
T  28052436 taattcccgttattttttcaaaagggtcctgtaattag 28052473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 28885893 - 28885856
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  28885893 taattcccgttattttttcaaaagggtcttataattag 28885856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 34931324 - 34931361
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  34931324 taattcccgttattttttcaaaaggatcctataattag 34931361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36695101 - 36695138
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  36695101 taattcccgttattttttcaaaagggtcttataattag 36695138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36711202 - 36711239
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  36711202 taattcccgttattttttcaaaagggtcttataattag 36711239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40614697 - 40614660
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  40614697 taattcccgttattttttcaaaagggccctataattag 40614660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 44529465 - 44529428
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  44529465 taattcccgttattttttcaaaagggccctataattag 44529428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 51561121 - 51561084
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  51561121 taattcccgttattttttcaaaagggccctataattag 51561084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52602236 - 52602273
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  52602236 taattcccgttattttttcaaaagggccctataattag 52602273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 33773826 - 33773864
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattaga 39  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  33773826 taattcccgttattttttcaaaagggtcctataattaga 33773864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 925725 - 925688
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  925725 taattcccgttattttttcaaaagggtcctataattag 925688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 13866840 - 13866877
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  13866840 taattcccgttattttttcaaaagggtcctataattag 13866877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15498874 - 15498911
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  15498874 taattcccgttattttttcaaaagggtcctataattag 15498911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19097593 - 19097556
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19097593 taattcccgttattttttcaaaagggtcctataattag 19097556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 31150038 - 31150001
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  31150038 taattcccgttattttttcaaaagggtcctataattag 31150001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8670380 - 8670417
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  8670380 taattcccgttattttttcaaaagggtactataattag 8670417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 9660184 - 9660147
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  9660184 taattcccgttattttttcaaaagggtcatataattag 9660147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11847818 - 11847855
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  11847818 taattcccgttattttttcaaaagggtcttataattag 11847855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31091690 - 31091727
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  31091690 taattcccgttattttttcaaaagggccctataattag 31091727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 1147059 - 1147023
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    ||||||||||  |||||||||||||||||||||||||    
T  1147059 taattcccgttgttttttcaaaagggtcctataatta 1147023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34126386 - 34126418
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctata 33  Q
    |||||||||| ||||||||||||||||||||||    
T  34126386 taattcccgttattttttcaaaagggtcctata 34126418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 34915332 - 34915296
Alignment:
Q  2 aattcccgtaattttttcaaaagggtcctataattag 38  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  34915332 aattcccgttattttttcaaaagggtcttataattag 34915296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 3576 - 3539
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  3576 taattcccgttattttttcaaaagggtcctataattag 3539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 6402 - 6365
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  6402 taattcccgttattttttcaaaagggtcctataattag 6365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 33381409 - 33381372
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  33381409 taattcccgttattttttcaaaagggtcctataattag 33381372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35569444 - 35569407
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  35569444 taattcccgttattttttcaaaagggtcctataattag 35569407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42298218 - 42298181
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  42298218 taattcccgtaattttttcaaaaggatcctataattag 42298181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1574964 - 1575001
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  1574964 taattcccgttattttttcaaaagggccctataattag 1575001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 12930565 - 12930602
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  12930565 taattcccgttattttttcaaaaggatcctataattag 12930602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19920807 - 19920844
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  19920807 taattcccgttattttttcaaaaaggtcctataattag 19920844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23109314 - 23109351
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||| ||||||||||||||||    
T  23109314 taattcccgttattttttcaatagggtcctataattag 23109351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 26843018 - 26843055
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  26843018 taattcccgttattttttcaaaagagtcctataattag 26843055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27529473 - 27529510
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  27529473 taattcccgttattttttcaaaaggatcctataattag 27529510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32759803 - 32759840
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  32759803 taattcccgttattttttcaaaagggccctataattag 32759840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43279949 - 43279986
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  43279949 taattcccgttattttttcaaaagggccctataattag 43279986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 45907490 - 45907527
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  45907490 taattcccgttattttttcaaaaggatcctataattag 45907527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2289806 - 2289770
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  2289806 taattcccgttatttttttaaaagggtcctataatta 2289770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11647626 - 11647590
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  11647626 taattcccgttattttttcaaaagggccctataatta 11647590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26889644 - 26889607
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  26889644 taattcccgttattttttcaaaagggtcctataattag 26889607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 18615852 - 18615818
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  18615852 taattcccgttattttttcaaaagggtcctataat 18615818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23285284 - 23285318
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  23285284 taattcccgttattttttcaaaagggtcctataat 23285318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4194925 - 4194962
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||| ||| |||||||||||||||||||||||||||    
T  4194925 taattctcgttattttttcaaaagggtcctataattag 4194962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7940697 - 7940734
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  7940697 taattcccgttattttttcaaaaggatcctataattag 7940734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9020940 - 9020977
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  9020940 taattcccgttattttttcaaaagggccctataattag 9020977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14436049 - 14436086
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  14436049 taattcccgttatttttttaaaagggtcctataattag 14436086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14649432 - 14649469
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  14649432 taattcccgttattttttcaaaagagtcctataattag 14649469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 14913894 - 14913931
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  14913894 taattcccgttattttttcaaaagggccctataattag 14913931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16441176 - 16441213
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  16441176 taattcccgttattttttcaaaagggccctataattag 16441213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20142051 - 20142014
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  20142051 taattcccgttattttttcaaaagggccctataattag 20142014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 20186748 - 20186785
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  20186748 taattcccgttattttttcaaaagggccctataattag 20186785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43060201 - 43060164
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  43060201 taattcccgttattttttcaaaagggtcatataattag 43060164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13620646 - 13620609
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  13620646 taattcccgttattttttcaaaagggtcctataattag 13620609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48030558 - 48030594
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  48030558 taattcccgttattttttcaaaagggtcctataatta 48030594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52850244 - 52850208
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  52850244 taattcccgttattttttcaaaagggtcctataatta 52850208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 30049874 - 30049840
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataat 35  Q
    |||||||||| ||||||||||||||||||||||||    
T  30049874 taattcccgttattttttcaaaagggtcctataat 30049840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 17339325 - 17339362
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  17339325 taattcccgttattttttcaaaagggccctataattag 17339362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 23777594 - 23777557
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  23777594 taattcccgttattttttcaaaaaggtcctataattag 23777557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 26625794 - 26625757
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    ||||||| || |||||||||||||||||||||||||||    
T  26625794 taattcctgttattttttcaaaagggtcctataattag 26625757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 36991161 - 36991198
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||| |||||||||||||||||    
T  36991161 taattcccgttattttttcagaagggtcctataattag 36991198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 39879984 - 39880021
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  39879984 taattcccgttattttttcaaaagggccctataattag 39880021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47683335 - 47683372
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  47683335 taattcccgttattttttcaaaaggatcctataattag 47683372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49373485 - 49373448
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  49373485 taattcccgttattttttcaaaagggccctataattag 49373448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 49489931 - 49489894
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  49489931 taattcccgttattttttcaaaagtgtcctataattag 49489894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50451015 - 50450978
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  50451015 taattcccgttattttttcaaaagggccctataattag 50450978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 54877806 - 54877769
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  54877806 taattcccgttatttttttaaaagggtcctataattag 54877769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 56432766 - 56432803
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  56432766 taattcccgttattttttcaaaagggccctataattag 56432803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6462481 - 6462445
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  6462481 taattcccgttattttttcaaaaaggtcctataatta 6462445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 18882600 - 18882636
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  18882600 taattcccgttattttttcaaaagggtcttataatta 18882636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37776526 - 37776490
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  37776526 taattcccgttattttttcaaaagagtcctataatta 37776490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 40809803 - 40809839
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  40809803 taattcccgttattttttcaaaagagtcctataatta 40809839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 55876625 - 55876661
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  55876625 taattcccgttatttttttaaaagggtcctataatta 55876661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 10015581 - 10015544
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  10015581 taattcccgttattttttcaaaagggtcctataattag 10015544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19897628 - 19897591
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  19897628 taattcccgttattttttcaaaagggtcctataattag 19897591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 20621476 - 20621439
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  20621476 taattcccgttattttttcaaaagggtcctataattag 20621439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 21459229 - 21459266
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  21459229 taattcccgttattttttcaaaagggtcctataattag 21459266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31187003 - 31187040
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  31187003 taattcccgttattttttcaaaagggtcctataattag 31187040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 32978726 - 32978763
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  32978726 taattcccgttattttttcaaaagggtcctataattag 32978763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 1450489 - 1450526
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  1450489 taattcccgttattttttcaaaagggtcttataattag 1450526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 6784709 - 6784746
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  6784709 taattcccgttattttttcaaaagggtcttataattag 6784746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12050185 - 12050148
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  12050185 taatttccgtaattttttcaaaaaggtcctataattag 12050148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15996565 - 15996528
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  15996565 taattcccgttattttttcaaaagggccctataattag 15996528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 42801572 - 42801535
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  42801572 taattcccgttattttttcaaaagggtcttataattag 42801535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 46049778 - 46049741
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||| ||||||||||||||    
T  46049778 taattcccgttattttttcaaaaaggtcctataattag 46049741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 47067181 - 47067218
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  47067181 taattcccgttattttttcaaaagggccctataattag 47067218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 49543879 - 49543916
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  49543879 taattcccgttattttttcaaaaggggcctataattag 49543916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50726576 - 50726539
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  50726576 taattcccgttatttttttaaaagggtcctataattag 50726539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 50786272 - 50786309
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  50786272 taattcccgttatttttttaaaagggtcctataattag 50786309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 52044734 - 52044771
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  52044734 taattcccgttattttttcaaaaggatcctataattag 52044771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13809599 - 13809563
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| |||||||||||||| |||||||||||    
T  13809599 taattcccgttattttttcaaaaggatcctataatta 13809563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14759081 - 14759117
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| |||||||||||||| |||||||||||    
T  14759081 taattcccgttattttttcaaaaggatcctataatta 14759117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17698824 - 17698788
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  17698824 taattcccgttattttttcaaaaaggtcctataatta 17698788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45513427 - 45513391
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  45513427 taatttccgttattttttcaaaagggtcctataatta 45513391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 48887736 - 48887704
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctata 33  Q
    |||||||||| ||||||||||||||||||||||    
T  48887736 taattcccgttattttttcaaaagggtcctata 48887704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2060563 - 2060600
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  2060563 taattcccgttattttttcaaaagggtcctataattag 2060600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 7531848 - 7531885
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7531848 taattcccgttattttttcaaaagggtcctataattag 7531885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12890000 - 12889963
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  12890000 taattcccgttattttttcaaaagggtcctataattag 12889963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15227941 - 15227904
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  15227941 taattcccgttattttttcaaaagggtcctataattag 15227904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 15435635 - 15435598
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  15435635 taattcccgttattttttcaaaagggtcctataattag 15435598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 23465380 - 23465417
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  23465380 taattcccgttattttttcaaaagggtcctataattag 23465417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40788880 - 40788843
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  40788880 taattcccgttattttttcaaaagggtcctataattag 40788843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40607949 - 40607987
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattaga 39  Q
    |||||||||| ||||||||||||||||| ||||||||||    
T  40607949 taattcccgttattttttcaaaagggtcttataattaga 40607987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 2200226 - 2200263
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  2200226 taattcccgttattttttcaaaagggtcttataattag 2200263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19034657 - 19034694
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  19034657 taattcccgttattttttcaaaaggatcctataattag 19034694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22182715 - 22182678
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  22182715 taattcccgttattttttcaaaagggccctataattag 22182678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24345664 - 24345701
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  24345664 taattcccgttattttttcaaaagggtcttataattag 24345701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 31751319 - 31751356
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  31751319 taattcccgttattttttcaaaagggccctataattag 31751356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 40680455 - 40680418
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||| | |||||||||||||||||||||||||||    
T  40680455 taattcccattattttttcaaaagggtcctataattag 40680418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41004188 - 41004225
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  41004188 taattcccgttattttttcaaaaggatcctataattag 41004225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 7933667 - 7933703
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    ||||||||||  |||||||||||||||||||||||||    
T  7933667 taattcccgttgttttttcaaaagggtcctataatta 7933703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12296218 - 12296182
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||||||||||||| ||||||||    
T  12296218 taattcccgttattttttcaaaagggtcatataatta 12296182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 34113773 - 34113809
Alignment:
Q  2 aattcccgtaattttttcaaaagggtcctataattag 38  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  34113773 aattcccgttattttttcaaaagggtcttataattag 34113809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 18742 - 18779
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  18742 taattcccgttattttttcaaaagggtcttataattag 18779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 48900 - 48937
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  48900 taattcccgttattttttcaaaaggatcctataattag 48937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 19749 - 19712
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataattag 38  Q
    |||||||||| ||||||||||||||||| |||||||||    
T  19749 taattcccgttattttttcaaaagggtcttataattag 19712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0674 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0674
Description:

Target: scaffold0674; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5396 - 5428
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctata 33  Q
    |||||||||| ||||||||||||||||||||||    
T  5396 taattcccgttattttttcaaaagggtcctata 5428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0549 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0549
Description:

Target: scaffold0549; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9974 - 9942
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctata 33  Q
    |||||||||| ||||||||||||||||||||||    
T  9974 taattcccgttattttttcaaaagggtcctata 9942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4455 - 4419
Alignment:
Q  1 taattcccgtaattttttcaaaagggtcctataatta 37  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  4455 taattcccgttattttttcaaaagggccctataatta 4419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University