View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_low_29 (Length: 251)
Name: NF12073_low_29
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_29 |
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| [»] scaffold0202 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 64; Significance: 4e-28; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 101 - 213
Target Start/End: Complemental strand, 31045665 - 31045551
Alignment:
| Q |
101 |
tatgaattgtcaaaatattcatatataaatcagaa--ttctgattcaaatagttgttatatacaggcataagtgtctcacatgttctctctagtaagatg |
198 |
Q |
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| T |
31045665 |
tatgaattgtcgaaatattcatatataaatcagaaaattttggttcaaatagttactatatatagggataggtgtcgcacatgatctctctagtaagatg |
31045566 |
T |
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| Q |
199 |
attcattcaagtttc |
213 |
Q |
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| T |
31045565 |
attcattcaagtttc |
31045551 |
T |
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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 213
Target Start/End: Complemental strand, 31056679 - 31056620
Alignment:
| Q |
154 |
ttatatacaggcataagtgtctcacatgttctctctagtaagatgattcattcaagtttc |
213 |
Q |
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| T |
31056679 |
ttatatacaggcataagtgtctcacatgttctctctgataagattattcatttaagtttc |
31056620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 31096480 - 31096523
Alignment:
| Q |
166 |
ataagtgtctcacatgttctctctagtaagatgattcattcaag |
209 |
Q |
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| T |
31096480 |
ataagtatctcacatgttctctctacaaagatgattcattcaag |
31096523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 31035379 - 31035350
Alignment:
| Q |
183 |
tctctctagtaagatgattcattcaagttt |
212 |
Q |
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| T |
31035379 |
tctctctagtaagatgattcattcaagttt |
31035350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0202 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0202
Description:
Target: scaffold0202; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 154 - 213
Target Start/End: Original strand, 5180 - 5239
Alignment:
| Q |
154 |
ttatatacaggcataagtgtctcacatgttctctctagtaagatgattcattcaagtttc |
213 |
Q |
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||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
5180 |
ttatatataggcataagtgtctcatgtgttctctctacaaagatgattcattcaagtttc |
5239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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