View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_low_3 (Length: 680)
Name: NF12073_low_3
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 448; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 38309075 - 38308595
Alignment:
| Q |
1 |
gttagtatgttttgctttggcgtttgtcaaactcaatcccacttttaatcttttctctaggtaatgttttaaactaaatttgattattttttgttggaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38309075 |
gttagtatgttttgctttggcgtttgtcaaactcaatcccacttttaatcttttctctaggtaatgttttaaactaaatttgattattttttgttggaat |
38308976 |
T |
|
| Q |
101 |
tgattgacagtaaggtgattagaagtgaagcaatggcagtaaatgtgagttttttctctttaggcagagcagttgaatgtgagctgggagtttaaaatat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38308975 |
tgattgacagtaaggtgattagaagtgaagcaatggcagtaaatgtgagttttttctctttaggcagagcagttgaatgtgagctgggagtttaaaatat |
38308876 |
T |
|
| Q |
201 |
tgtagcttgtagtgctcatttagtttttaattttgataaataaggtagt-ggtctttaaactataaatctatctaaacacgaacaatgttaatgaaaata |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
38308875 |
tgtagcttgtagtgctcatttagtttttaattttgataaataaggtagtgggtctttaaactataaatctatctaaacacgaataatgttaatgaaaata |
38308776 |
T |
|
| Q |
300 |
ttaatttaaattcaaatgttagctaaactcagttattttttgcagcagattannnnnnnagaaaaataattaagtttgtgtgctgagcaacgtattcaca |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38308775 |
ttaatttaaattcaaatgttagctaaactcagttattttttgcagcagattatttttttagaaaaataattaagtttgtgtgctgagcaacgtattcaca |
38308676 |
T |
|
| Q |
400 |
aacagcccatgcaactatacaaattaggattgcatgtggttgaattcaaggacatgatcttgcgtttatgctaaactaccg |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38308675 |
aacagcccatgcaactatacaaattaggattgcatgtggttgaattcaaggacatgatcttgcgtttatgctaaactaccg |
38308595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 556 - 655
Target Start/End: Complemental strand, 38308519 - 38308420
Alignment:
| Q |
556 |
gtaggggcgtggctctacgaggcccccctcacccatcaaaaccaatcttctggtaggnnnnnnncctcataactatcgaaatccatcttttgacagatgt |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38308519 |
gtaggggcgtggctctacgaggcccccctcacccatcagaaccaatcttctggtaggtttttttcctcataactatcgaaatccatcttttgacagatgt |
38308420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University