View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12073_low_33 (Length: 244)
Name: NF12073_low_33
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 221
Target Start/End: Original strand, 13713126 - 13713348
Alignment:
| Q |
11 |
tgagatgaaaagattttagggttaggtggtgaga-----------acataacagcgtctataaattgacgaaactgaatcaagtcctcagagttttgcac |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
13713126 |
tgagatgaaaagattttagggttaggtggtgagagtatgtggagaacataacagcgtccataaattgacggaaatgaatcaagtcctctgagttttgcac |
13713225 |
T |
|
| Q |
100 |
ccttctgtcgtcgatgacaggattggagagtgagtaagacaa-ggggtgccacctcttggaaagaacggtgattctgaaagcttcacgggtaggaagaaa |
198 |
Q |
| |
|
||||||||||||||||||| ||| |||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13713226 |
ccttctgtcgtcgatgacaagatcggagagtgagtaagacaagggggtgtcacctcttggaaagaacggtgattctgaaagcttcacgggtaggaagaaa |
13713325 |
T |
|
| Q |
199 |
agagagaaggtgagttagtatct |
221 |
Q |
| |
|
|||||||||||| |||||||||| |
|
|
| T |
13713326 |
agagagaaggtgggttagtatct |
13713348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 219
Target Start/End: Original strand, 19970572 - 19970643
Alignment:
| Q |
148 |
ccacctcttggaaagaacggtgattctgaaagcttcacgggtaggaagaaaagagagaaggtgagttagtat |
219 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||| || | | | |||||||||||||||| |||||||||||| |
|
|
| T |
19970572 |
ccacgtcttggaaagcacggtggttctgaaagcgtctctgattggaagaaaagagagaatgtgagttagtat |
19970643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University