View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_low_36 (Length: 229)
Name: NF12073_low_36
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33857765 - 33857987
Alignment:
| Q |
1 |
caaactgataggtttactaaacttactaagcccactttaatataacttagacccaacatttttctaacatcatcgtccaaacagcatgagtcagcattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857765 |
caaactgataggtttactaaacttactaagcccactttaatataacttagacccaacatttttctaacatcatcgtccaaacagcatgagtcagcattat |
33857864 |
T |
|
| Q |
101 |
gcatggattcttactttgtgaattcttgcttcaatcttggattctttgtagacgacactgccattacttgatgtgattttctggagttgttttggaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33857865 |
gcatggattcttactttgtgaattcttgcttcaatcttggattctttgtaaatgacactgccattacttgatgtgattttctggagttgttttggaatga |
33857964 |
T |
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| Q |
201 |
tatggccatagtaagattacaaa |
223 |
Q |
| |
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|||||||||| |||||||||||| |
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| T |
33857965 |
tatggccataataagattacaaa |
33857987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 33923158 - 33922936
Alignment:
| Q |
1 |
caaactgataggtttactaaacttactaagcccactttaatataacttagacccaacatttttctaacatcatcgtccaaacagcatgagtcagcattat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33923158 |
caaactgataggtttactaaacttactaagcccactttaatataacttagacccaacatttttctaacatcatcgtccaaacagcatgagtcagcattat |
33923059 |
T |
|
| Q |
101 |
gcatggattcttactttgtgaattcttgcttcaatcttggattctttgtagacgacactgccattacttgatgtgattttctggagttgttttggaatga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33923058 |
gcatggattcttactttgtgaattcttgcttcaatcttggattctttgtaaatgacactgccattacttgatgtgattttctggagttgttttggaatga |
33922959 |
T |
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| Q |
201 |
tatggccatagtaagattacaaa |
223 |
Q |
| |
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|||||||||| |||||||||||| |
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| T |
33922958 |
tatggccataataagattacaaa |
33922936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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