View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_low_38 (Length: 210)
Name: NF12073_low_38
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 6e-70; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 38308380 - 38308212
Alignment:
| Q |
24 |
gtattttgagcattgtagccttcttctgtaaccccatattcttgacgtaataattaataactctgttttcccaaatgaagtaaaaaacggaagnnnnnnn |
123 |
Q |
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| T |
38308380 |
gtattttgagcattgtagccttcttctgtaaccccatattcttgacgtaataattaataactctgttttcccaaatgaagtaaaaaacggaag-aaaaaa |
38308282 |
T |
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| Q |
124 |
nncagaaaatgtttttcaggagagcaaccaagtcaggaaatatttgttgaatgaatgttctcttccattt |
193 |
Q |
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| T |
38308281 |
aacagaaaaagtttttcaggagagcaaccaagtcaggaaatatttgttgaatgaatgttctcttccattt |
38308212 |
T |
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