View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12073_low_4 (Length: 645)
Name: NF12073_low_4
Description: NF12073
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12073_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 280; Significance: 1e-156; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 248 - 534
Target Start/End: Complemental strand, 38221384 - 38221097
Alignment:
| Q |
248 |
tagaaaataacaggttgttggaattccgctacgctatagtcctattaaataacactgtactaatcaacgtattactaagtacatttacgtgacaatat-t |
346 |
Q |
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| T |
38221384 |
tagaaaataacaggttgttggaattccgctacgctatagtcctattaaataacactgtactaatcaacgtattactaagtacatttacgtgacaatatat |
38221285 |
T |
|
| Q |
347 |
atgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttcattaagctcatttacattacatgcatgtatcttaaaatttctatt |
446 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38221284 |
atgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttcattaagctcatttacattacatgcatgtatcttaaaatttctatt |
38221185 |
T |
|
| Q |
447 |
cataatgcaacattttaatcattctaacaagaggaaagaaagagttatactaatttgactaacaatgcacaataatatcgccgtagtt |
534 |
Q |
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| T |
38221184 |
cataatgcaacattttaatcattctaacaagaggaaagaaagagttatactaatttgactaacaatgcacaataatatcgccgtagtt |
38221097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 38221699 - 38221442
Alignment:
| Q |
8 |
agagaagaaactttttgggatcatcaagcatcatgataaaggcattcatgattaacagtttcgaattgtgagtatgttctacagctccatatac------ |
101 |
Q |
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| T |
38221699 |
agagaagaaactttttgggatcatgaagcatcatgataaaggcactcatgattaacagtttggaattgtgagtaggttctacagctccatatacttccac |
38221600 |
T |
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| Q |
102 |
--------agttaatggttggtaacaaaaccaatgcctcaccttcaatgacaagaatttcaagacttgtcttaaattttgcactaaattgacattaacaa |
193 |
Q |
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| T |
38221599 |
tgctctatagttaatggttggtaacaaaaccaatgcctcaccttcaatgacaagaatttcaagacttgtcttatattttgcactaaattgacattaacaa |
38221500 |
T |
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| Q |
194 |
acgcttgagtagaagaaaaataaccaattacagtaacgtcaagacttacagatataga |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38221499 |
acgcttgagtagaagaaaaataaccaattacagtaacgtcaagacttacagatataga |
38221442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 303 - 534
Target Start/End: Complemental strand, 38156995 - 38156768
Alignment:
| Q |
303 |
tgtactaatcaacgtattactaagtacatttacgtgacaatattatgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttca |
402 |
Q |
| |
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||||||||||| |||||||| || |||| |||||||||||||| ||||||||||| ||||||||| ||| |||||||||||||| ||||||| ||||||| |
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| T |
38156995 |
tgtactaatcagcgtattacaaaatacacttacgtgacaatatcatgagttttcagtggatgttgatgtcaaactattttacaccgacaatgcatcttca |
38156896 |
T |
|
| Q |
403 |
ttaagctcatttacattacatgcatgtatcttaaaatttctattcataatgcaacattttaatcattctaacaagaggaaagaaagagttatactaattt |
502 |
Q |
| |
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|||| ||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38156895 |
ttaaactcatttacattacatgtatgt----taaaatttctattcataatgcaacattttaatcattctaacaagaggaaagaaagagttatactaattt |
38156800 |
T |
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| Q |
503 |
gactaacaatgcacaataatatcgccgtagtt |
534 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
38156799 |
gactaacaatgcacaataatatcgccgtagtt |
38156768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 307 - 538
Target Start/End: Original strand, 38178236 - 38178456
Alignment:
| Q |
307 |
ctaatcaacgtattactaagtacatttacgtgacaatattatgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttcattaa |
406 |
Q |
| |
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||||||| |||||||| |||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||| || || | ||||||| ||| |
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| T |
38178236 |
ctaatcagcgtattacaaagtacatttgcgtgacaatatcatgagttttcaatggatgttcgagtaaaactattttacaccgataacggatcttcaataa |
38178335 |
T |
|
| Q |
407 |
gctcatttacattacatgcatgtatcttaaaatttctattcataatgcaacattttaatcattctaacaagaggaaagaaagagttatactaatttgact |
506 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38178336 |
actcatttacatta----catgtatcttaaaattattattcataatgccacattttaatcattctaacaagag----gaaagagttatactaatttgact |
38178427 |
T |
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| Q |
507 |
aacaatgcacaataatatcgccgtagttttct |
538 |
Q |
| |
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| T |
38178428 |
aacaatgcac---aatatcgccgtagttttct |
38178456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 307 - 538
Target Start/End: Original strand, 38205460 - 38205680
Alignment:
| Q |
307 |
ctaatcaacgtattactaagtacatttacgtgacaatattatgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttcattaa |
406 |
Q |
| |
|
||||||| |||||||| |||||||||| ||||||||||| |||||||||||||||||||| | ||||||||||||||||| || || | ||||||| ||| |
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| T |
38205460 |
ctaatcagcgtattacaaagtacatttgcgtgacaatatcatgagttttcaatggatgttcgagtaaaactattttacaccgataacggatcttcaataa |
38205559 |
T |
|
| Q |
407 |
gctcatttacattacatgcatgtatcttaaaatttctattcataatgcaacattttaatcattctaacaagaggaaagaaagagttatactaatttgact |
506 |
Q |
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||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
38205560 |
actcatttacatta----catgtatcttaaaattattattcataatgccacattttaatcattctaacaagag----gaaagagttatactaatttgact |
38205651 |
T |
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| Q |
507 |
aacaatgcacaataatatcgccgtagttttct |
538 |
Q |
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|||||||||| ||||||||||||||||||| |
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| T |
38205652 |
aacaatgcac---aatatcgccgtagttttct |
38205680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 332 - 482
Target Start/End: Complemental strand, 38168008 - 38167862
Alignment:
| Q |
332 |
ttacgtgacaatattatgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttcattaagctcatttacattacatgcatgtat |
431 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||| |||||||||||||||||| || |
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| T |
38168008 |
ttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcattttcattaaactcatttacattacatgc----at |
38167913 |
T |
|
| Q |
432 |
cttaaaatttctattcataatgcaacattttaatcattctaacaagaggaa |
482 |
Q |
| |
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|||| ||||||| |||||||||| ||||||||||||||||||||||||||| |
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|
| T |
38167912 |
cttagaatttcttttcataatgccacattttaatcattctaacaagaggaa |
38167862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 332 - 482
Target Start/End: Original strand, 38199096 - 38199242
Alignment:
| Q |
332 |
ttacgtgacaatattatgagttttcaatggatgttggtgtaaaactattttacactgacaatgtatcttcattaagctcatttacattacatgcatgtat |
431 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||| || |||||||| |||||||||||||||||| || |
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| T |
38199096 |
ttacgtgacaatatcatgagttttcaatggatgttggtgtaaaactattttagaccgacaatgcattttcattaaactcatttacattacatgc----at |
38199191 |
T |
|
| Q |
432 |
cttaaaatttctattcataatgcaacattttaatcattctaacaagaggaa |
482 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||||||||||||||||||||| |
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| T |
38199192 |
cttagaatttcttttcataatgccacattttaatcattctaacaagaggaa |
38199242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 38149851 - 38149785
Alignment:
| Q |
318 |
attactaagtacatttacgtgacaatattatgagttttcaatggatgttggtgtaaaactattttac |
384 |
Q |
| |
|
||||| ||||||| ||||||| ||||| | ||||||||| |||||||||||||||||||| |||| |
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| T |
38149851 |
attacaaagtacacttacgtggtaatatcacgagttttcatgggatgttggtgtaaaactatattac |
38149785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 535 - 586
Target Start/End: Original strand, 26032753 - 26032807
Alignment:
| Q |
535 |
ttcttccctttttca---acgaaattggtctcagacaaatgcacatgcctagcat |
586 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||| |||| ||||||||| |
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|
| T |
26032753 |
ttcttccctttttcatcaacgaaatttgtctcagacaaatacacacgcctagcat |
26032807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 248 - 292
Target Start/End: Complemental strand, 38157072 - 38157028
Alignment:
| Q |
248 |
tagaaaataacaggttgttggaattccgctacgctatagtcctat |
292 |
Q |
| |
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|||||||||| |||||||| ||||||||||| |||||||| |||| |
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|
| T |
38157072 |
tagaaaataataggttgttagaattccgctatgctatagtactat |
38157028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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