View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12074_low_1 (Length: 531)
Name: NF12074_low_1
Description: NF12074
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12074_low_1 |
 | |
|
| [»] scaffold0007 (1 HSPs) |
| | |
|
| [»] scaffold0012 (3 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 497; Significance: 0; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 497; E-Value: 0
Query Start/End: Original strand, 14 - 526
Target Start/End: Complemental strand, 29471663 - 29471151
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29471663 |
atcaagaagaatatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaggtcaatgatttgcagtt |
29471564 |
T |
|
| Q |
114 |
taatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29471563 |
taatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcg |
29471464 |
T |
|
| Q |
214 |
atagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatt |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29471463 |
atagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatt |
29471364 |
T |
|
| Q |
314 |
tgcagttcctcagacaaatatattctacatgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
29471363 |
tgcagttcctcagacaaatatattctacatgtgaagattgcattgggctcactttttcttcagcctggatggtaaattcagccagttttgacatcacagc |
29471264 |
T |
|
| Q |
414 |
agctctattcgataaataaacaactccacagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagta |
513 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29471263 |
agctctattcgataaataaacaactccacagttacattgatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagta |
29471164 |
T |
|
| Q |
514 |
ttatccaagtgaa |
526 |
Q |
| |
|
||||||||||||| |
|
|
| T |
29471163 |
ttatccaagtgaa |
29471151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 24 - 523
Target Start/End: Original strand, 29663171 - 29663666
Alignment:
| Q |
24 |
atatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtttaatgcagat |
123 |
Q |
| |
|
|||||||||||||||| ||| ||| |||||||| ||||| |||||| ||||||||||||||||||| | |||| || ||||||||||| || |||||| |
|
|
| T |
29663171 |
atatcaaatacattaacaataaaa-acaaaataaatcattacctgacttagtaatttgcttttgcatgacgaagacagcgatttgcagttaaaagcagat |
29663269 |
T |
|
| Q |
124 |
aatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcgatagattttg |
223 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |||| ||||| |||||||||||||||||||| |||||| | |
|
|
| T |
29663270 |
aatgattttaagcatggtggaatccctttaatttcctgaagttccttacaattatccaagacaggcctccataaaaaatgacatttttcgaaagatttag |
29663369 |
T |
|
| Q |
224 |
gaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatttgcagttcct |
323 |
Q |
| |
|
|||||| ||||||| | ||| |||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||| || ||| || || || |
|
|
| T |
29663370 |
gaagaaacgtgaattgactttcatttaggtgtaattctttcacattagcaaacaacatgagacctattgacaagtactcatctggaacttttcaatttct |
29663469 |
T |
|
| Q |
324 |
cagacaaatatattctacatgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagcagctctattc |
423 |
Q |
| |
|
||||||||||||||||| ||| ||||||| || ||| || |||||| |||||||||||||||| |||| |||||||||||||| || | ||| | |
|
|
| T |
29663470 |
aagacaaatatattctacgtgtaaagattggatcgggatcactttttgttcagcctggatggtacattccaccagttttgacatcgcataattactagtt |
29663569 |
T |
|
| Q |
424 |
gataaataaacaactccacagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaagt |
523 |
Q |
| |
|
| ||| |||||| |||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||| |
|
|
| T |
29663570 |
ggtaaggaaacaaatccacagttacatggatata---ttttaggcagagtaagattttgaaatggaaacggcaattcttttatgggagtatattccaagt |
29663666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 14 - 524
Target Start/End: Original strand, 29689604 - 29690110
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtt |
113 |
Q |
| |
|
||||||||||||| ||||||| || ||||| || | ||||| || ||||||||||||||||| ||||||||||| | ||||||||| |||||||| |
|
|
| T |
29689604 |
atcaagaagaatagaaaatacagtacaaatttaaaaataaataaat-ataacctgatttagtaaattgcttttgcatgacgaagtcaat---ttgcagtt |
29689699 |
T |
|
| Q |
114 |
taatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcg |
213 |
Q |
| |
|
|| ||||||||| | |||||||||| |||||||||| |||||||| |||||||| ||| | ||||| ||| || || || ||||| ||||||||| |
|
|
| T |
29689700 |
tactgcagataactctcttaagcatggaggaatccctttaatttcctcaagttccttacaatcatccaagaccagtttccatagaaaattacatttttca |
29689799 |
T |
|
| Q |
214 |
atagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatt |
313 |
Q |
| |
|
|||||||| |||| || | |||||| | | | |||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
29689800 |
atagatttaggaataactgtgaatttactgttagttaggtgtaattctttcacattagcaaacaacatgagagtttttgacagatattcatctgaaagtt |
29689899 |
T |
|
| Q |
314 |
tgcagttcctcagacaaatatattctacatgtgaagattgcattgggctctctttttcttcagcctggatggtaga-ttcagccagttttgacatcacag |
412 |
Q |
| |
|
|||| ||| ||| ||||||||| | ||||||||||||||| ||||||||| |||||| || ||||| |||| ||| |||||||| ||||||||||| || |
|
|
| T |
29689900 |
tgcatttcttcacacaaatatactttacatgtgaagattgtattgggctcattttttcctcggcctgaatgg-agagttcagccatttttgacatcaaag |
29689998 |
T |
|
| Q |
413 |
cagctctattcgataaataaacaactccacagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagt |
512 |
Q |
| |
|
||||||||| | || || | |||||||||||||||||| ||||||| ||| | ||||||||||||||||||||||| ||||||| |||| |||| |
|
|
| T |
29689999 |
aagctctatttggaaagcaagaatgtccacagttacatggataatatgtttggggctgtgtaagattttgaaatggaaacggtaattcttttatgggagt |
29690098 |
T |
|
| Q |
513 |
attatccaagtg |
524 |
Q |
| |
|
| ||||||||| |
|
|
| T |
29690099 |
ttcatccaagtg |
29690110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 14 - 524
Target Start/End: Original strand, 29767586 - 29768092
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtt |
113 |
Q |
| |
|
|||||||| ||||| |||||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
|
|
| T |
29767586 |
atcaagaaaaatataaaatacattacaaataaaa-acaaaataaatcataacctgatttagtaatttgcttttgcacgacgaagtcaata---tgcagtt |
29767681 |
T |
|
| Q |
114 |
taatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcg |
213 |
Q |
| |
|
|| ||||||||| | |||||||||| |||||||||| |||||| |||||||| ||| | ||||| ||| | || |||||| ||||||||||| |
|
|
| T |
29767682 |
tagtgcagataactctcttaagcatggaggaatccctttcatttccataagttccttacaatcatccaagacgattttccataaaaattgacatttttca |
29767781 |
T |
|
| Q |
214 |
atagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatt |
313 |
Q |
| |
|
|||||||| |||| || | ||||||| | | ||| ||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||| || |
|
|
| T |
29767782 |
atagatttaggaataactgtgaattgacagttagttatgtgtagttctttcacattagcaaacaacatgagacttattgacagatattcatctgaaagtt |
29767881 |
T |
|
| Q |
314 |
tgcagttcctcagacaaatatattctacatgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagc |
413 |
Q |
| |
|
|||||||||| | ||||||||| | ||||||||||||||||||| || || |||||||||||||| ||||||| ||||||| || |||||||||| | |
|
|
| T |
29767882 |
tgcagttcctgacacaaatatactttacatgtgaagattgcatttggttcattttttcttcagccttgatggtaagttcagccgattctgacatcacaac |
29767981 |
T |
|
| Q |
414 |
agctctattcgataaataaacaactccacagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagta |
513 |
Q |
| |
|
| ||||||| | ||| || |||||||| ||||| | ||| |||||||| |||||||| |||||||| |||| || ||||||| |||| |||| |
|
|
| T |
29767982 |
atctctatttggtaagcggccatatccacagtcacatgaaacaaatctttgaggctgagtaagagtttgaaattgaaatggaaattcttttatgggagtt |
29768081 |
T |
|
| Q |
514 |
ttatccaagtg |
524 |
Q |
| |
|
| ||||||||| |
|
|
| T |
29768082 |
tcatccaagtg |
29768092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 28487892 - 28488285
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaata-caaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagt |
112 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||| ||||||| ||||||||||| |||| |||| |||||||||| | |||||||| ||| |||| | |
|
|
| T |
28487892 |
atcaataagaatatcaaatacattacaaat--aatagcaaaataaatcataacctgctttactaatatgcttttgcatgaagaagtcaacgatatgcaat |
28487989 |
T |
|
| Q |
113 |
ttaatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttc |
212 |
Q |
| |
|
||| ||||||||| ||||||||| ||| ||| |||||| |||||||||||| |||| || | ||||| || || || ||||||||||||||||| |
|
|
| T |
28487990 |
ttagtgcagataacatttttaagcttggaggattccctttaatttcctgaagatccttgcaatcatccaaaacgagtttccacaaaaaatgacatttttc |
28488089 |
T |
|
| Q |
213 |
gatagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaat |
312 |
Q |
| |
|
|||||||| ||||||| | ||||||| | | | |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
28488090 |
aatagatttaggaagaactgtgaattgaatgttagttaggtgtaattctttcacattagcaaacaacatgagatttagtgacagatattcatctgaaagt |
28488189 |
T |
|
| Q |
313 |
ttgcagttcctcagacaaatatattctacatgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatc |
408 |
Q |
| |
|
||||||| ||| | |||||||| | |||||||| |||||| |||| | | ||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
28488190 |
ttgcagtccctgatgcaaatatactttacatgtgcagattggattgcgtacactttttcttcattctggatggtaaattcagccacttttgacatc |
28488285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 29800304 - 29800697
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaata-caaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagt |
112 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||| ||||||| ||||||||||| |||| |||| |||||||||| | |||||||| ||| |||| | |
|
|
| T |
29800304 |
atcaataagaatatcaaatacattacaaat--aatagcaaaataaatcataacctgctttactaatatgcttttgcatgaagaagtcaacgatatgcaat |
29800401 |
T |
|
| Q |
113 |
ttaatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttc |
212 |
Q |
| |
|
||| ||||||||| ||||||||| ||| ||| |||||| |||||||||||| |||| || | ||||| || || || ||||||||||||||||| |
|
|
| T |
29800402 |
ttagtgcagataacatttttaagcttggaggattccctttaatttcctgaagatccttgcaatcatccaaaacgagtttccacaaaaaatgacatttttc |
29800501 |
T |
|
| Q |
213 |
gatagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaat |
312 |
Q |
| |
|
|||||||| ||||||| | ||||||| | | | |||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
29800502 |
aatagatttaggaagaactgtgaattgaatgttagttaggtgtaattctttcacattagcaaacaacatgagatttagtgacagatattcatctgaaagt |
29800601 |
T |
|
| Q |
313 |
ttgcagttcctcagacaaatatattctacatgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatc |
408 |
Q |
| |
|
||||||| ||| | |||||||| | |||||||| |||||| |||| | | ||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
29800602 |
ttgcagtccctgatgcaaatatactttacatgtgcagattggattgcgtacactttttcttcattctggatggtaaattcagccacttttgacatc |
29800697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 58 - 375
Target Start/End: Original strand, 29718834 - 29719151
Alignment:
| Q |
58 |
atcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtttaatgcagataatgtttttaagcatggtggaatcccttcaattt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||| |||||| || ||||||||| | |||||| ||| |||||||||| ||||| |
|
|
| T |
29718834 |
atcataacctgatttagtaatttgcttttgcacgacgaagtcaacgatatgcagtgtactgcagataacactcttaagcgtggaggaatccctttaattt |
29718933 |
T |
|
| Q |
158 |
cctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcgatagattttggaagaattttgaattggttatcacttaggtgtaa |
257 |
Q |
| |
|
| |||||||||| ||| | ||||| |||||| || |||||| ||||||||||| |||||||| |||| |||| ||| ||| || | |||||||||| |
|
|
| T |
29718934 |
cgtgaagttccttacaatcatccaagacaagtttccataaaaattgacatttttcaatagatttaggaataattgtgagttgattgtttgttaggtgtaa |
29719033 |
T |
|
| Q |
258 |
ttctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaattt-gcagttcctcagacaaatatattctacatgtgaagattgcat |
356 |
Q |
| |
|
|||||||||||| | ||||||||| ||| ||||||| |||||||||||| ||| ||| ||||| | ||||||||| | ||||| |||||||||||| |
|
|
| T |
29719034 |
ttctttcacattggcaaacaacataagagtttttgacaataattcatctgaaagtttagca-ttcctgacacaaatatactttacatttgaagattgcat |
29719132 |
T |
|
| Q |
357 |
tgggctctctttttcttca |
375 |
Q |
| |
|
|| || ||||||||||| |
|
|
| T |
29719133 |
tgaattcactttttcttca |
29719151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 14 - 309
Target Start/End: Original strand, 29756072 - 29756367
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtt |
113 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||| | |||||| ||||||||||||||||| |||||||| ||||||| |||||||| || |||||||| |
|
|
| T |
29756072 |
atcaagaagaatataaaatacattacaaataaaaaagaaaataaatcataacctgatttagcaatttgctcttgcacgacgaagtcaacgacttgcagtt |
29756171 |
T |
|
| Q |
114 |
taatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcg |
213 |
Q |
| |
|
|| ||||||||| || |||||||||| |||||||||| |||||| | |||| || ||| | ||||| || || || ||||| ||||| ||||| |
|
|
| T |
29756172 |
tagtgcagataacattcttaagcatggaggaatccctttaatttctttaagtgccgtacaatcatccaagatgagtttccacaaaaattgacaattttca |
29756271 |
T |
|
| Q |
214 |
atagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaa |
309 |
Q |
| |
|
|||||||| |||| || | |||| || ||| | ||| |||||||||||||||||||| ||||||||| |||| |||||| |||||| |||||| |
|
|
| T |
29756272 |
atagatttaggaataactgtgaaatgattactagttaagtgtaattctttcacattagcaaacaacataagactttttgacagatattcctctgaa |
29756367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 14 - 169
Target Start/End: Original strand, 29671716 - 29671871
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaatacaaaatatatcataa-cctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagt |
112 |
Q |
| |
|
||||| |||||||| ||||| |||| |||| ||| |||||||| ||||||| |||||||||||||||||||| |||||| |||||||| || |||||| |
|
|
| T |
29671716 |
atcaaaaagaatataaaataaattacaaataaaa-acaaaataaatcataaacctgatttagtaatttgcttgtgcacgaagaagtcaacgacgtgcagt |
29671814 |
T |
|
| Q |
113 |
ttaatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcct |
169 |
Q |
| |
|
||| |||||||| || |||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
29671815 |
ttacagcagataacattcttaagcatggaggaatcactttaatttcctgaagttcct |
29671871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 22 - 169
Target Start/End: Original strand, 29712161 - 29712303
Alignment:
| Q |
22 |
gaatatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtttaatgcag |
121 |
Q |
| |
|
|||||| |||||||||| |||| ||| | |||| | ||||||||||||||||||||| |||||||||||| |||||||| || ||||||||| ||||| |
|
|
| T |
29712161 |
gaatataaaatacattacaaataaaa-ataaaaaaaatcataacctgatttagtaatctgcttttgcacgacgaagtcaacgacatgcagtttactgcag |
29712259 |
T |
|
| Q |
122 |
ataatgtttttaagcatggtggaatcccttcaatttcctgaagttcct |
169 |
Q |
| |
|
|||| ||||||||| |||||| ||| ||||||||||||||||| |
|
|
| T |
29712260 |
ataa----cataagcatggaggaatcacttgaatttcctgaagttcct |
29712303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 28488347 - 28488414
Alignment:
| Q |
440 |
cacagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatg |
507 |
Q |
| |
|
||||||||||||||| ||||||||| || | |||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
28488347 |
cacagttacatggatgaaatgtttgaagctgggtaagattttgaaatggaaatggcaactcttctatg |
28488414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 440 - 507
Target Start/End: Original strand, 29800759 - 29800826
Alignment:
| Q |
440 |
cacagttacatggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatg |
507 |
Q |
| |
|
||||||||||||||| ||||||||| || | |||||||||||||||||||| ||||| |||| |||| |
|
|
| T |
29800759 |
cacagttacatggatgaaatgtttgaagctgggtaagattttgaaatggaaatggcaactcttctatg |
29800826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 48 - 500
Target Start/End: Complemental strand, 74816 - 74364
Alignment:
| Q |
48 |
tacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtttaatgcagataatgtttttaagcatggtggaatc |
147 |
Q |
| |
|
||||||||| |||| |||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||| |||||| |
|
|
| T |
74816 |
tacaaaataaatcacaacctgatttagtaattttcttttgcacgacgaagtcaatgatttgcagtttattgcagataaagtttttaagcatggaggaatc |
74717 |
T |
|
| Q |
148 |
ccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcgatagattttggaagaattttgaattggttatcac |
247 |
Q |
| |
|
|||||||||||| ||| ||||||||| | ||||| |||||||||| |||||||| |||||| || |||||||| ||||||| | ||||||| || ||| |
|
|
| T |
74716 |
ccttcaatttcccgaatttcctcacaatcatccaagacaagcctccataaaaaattacatttctcaatagatttaggaagaactgtgaattgattttcag |
74617 |
T |
|
| Q |
248 |
ttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatttgcagttcctcagacaaatatattctacatgtga |
347 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| || |||| |||||||||||||||| |||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
74616 |
ttaggtgtaattcttttacattagcaaacaacatgaaacttattgaaaaatattcatctgaaagtttgcagttcctgagacaaatatattctacttgtga |
74517 |
T |
|
| Q |
348 |
agattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagcagctctattcgataaataaacaactccacagtta |
447 |
Q |
| |
|
||||||| | |||||| ||||| |||| ||| |||| || |||||||||| |||| || || ||||||| | |||||||||| |||||| || |
|
|
| T |
74516 |
agattgcttcgggctcacttttctttcacccttgatgataaattcagccagcagcgacaatgcaacaactctatttggtaaataaacagttccacatttg |
74417 |
T |
|
| Q |
448 |
catggatataatgtttgaggcggagtaagattttgaaatggaaacggcaattc |
500 |
Q |
| |
|
||||||||| ||||| || || ||||| |||||| |||||||||||| ||||| |
|
|
| T |
74416 |
catggatatgatgttggaagcagagtatgattttcaaatggaaacggaaattc |
74364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 186; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 58 - 522
Target Start/End: Complemental strand, 618518 - 618069
Alignment:
| Q |
58 |
atcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtttaatgcagataatgtttttaagcatggtggaatcccttcaattt |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
618518 |
atcataacctgatttagtaatttgcttttgcacgacgaagtcaacgatttgcagtttattgcagataaagattttaagcatggaggaatcccttcaattt |
618419 |
T |
|
| Q |
158 |
cctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcgatagattttggaagaattttgaattggttatcacttaggtgtaa |
257 |
Q |
| |
|
|| |||||||||||| | ||||| |||||||||| ||||| ||||||||||||||||||||| ||||||| | ||||||| || | | |||||||||| |
|
|
| T |
618418 |
ccaaaagttcctcacaatcatccaagacaagcctccataaaagatgacatttttcgatagatttaggaagaactgtgaattgatttttagttaggtgtaa |
618319 |
T |
|
| Q |
258 |
ttctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatttgcagttcctcagacaaatatattctacatgtgaagattgcatt |
357 |
Q |
| |
|
|||||||||||||| ||||||||| |||| |||||| |||||||||||||| |||||||||||| | |||||||| | ||||||||||||||||||| |
|
|
| T |
618318 |
ttctttcacattagcaaacaacataagactttttgacagatattcatctgaaagtttgcagttcctgacacaaatatgctttacatgtgaagattgcatt |
618219 |
T |
|
| Q |
358 |
gggctctctttttcttcagcctggatggtagattcagccagttttgacatcacagcagctctattcgataaataaacaactccacagttacatggatata |
457 |
Q |
| |
|
| | || |||| |||||| |||||| ||| ||||||||||| |||||||| ||||| | ||| || ||| ||||||||||| ||| |
|
|
| T |
618218 |
gcgttcactttctcttcattctggatagtaaattcagccagtcttgacatc---------ctatttggtaagtagacatatccacagttac------ata |
618134 |
T |
|
| Q |
458 |
atgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaag |
522 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||| |||| |||| | ||||||| |
|
|
| T |
618133 |
atgtttgaggttgtgtaagattttgaaatggaaacggcaattcttttatgggagtttcatccaag |
618069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 14 - 355
Target Start/End: Complemental strand, 12592096 - 12591756
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtt |
113 |
Q |
| |
|
||||| ||||||| |||||||||| ||| ||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
12592096 |
atcaaaaagaatacaaaatacattacaaacaaaa-acaaaatgaatcataacctgatttagtaatttgcttttgcacgacgaagtcaatgacttgcagtt |
12591998 |
T |
|
| Q |
114 |
taatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcg |
213 |
Q |
| |
|
|| ||||||||| || |||||| ||| |||||||||| ||||||||||||||||| ||| | ||||| ||| || || |||||||||||||| |||| |
|
|
| T |
12591997 |
tagtgcagataacattcttaagcgtggaggaatccctttaatttcctgaagttccttacaatcatccaagacgagtttccataaaaaatgacattcttcg |
12591898 |
T |
|
| Q |
214 |
atagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatt |
313 |
Q |
| |
|
||| | || ||||||| ||||||||| | | | ||||||||||||||| |||||||| |||||| |||||| |||||| || ||||| ||||| || |
|
|
| T |
12591897 |
atacaattaggaagaactttgaattgatagttagttaggtgtaattcttgcacattagaaaacaagatgagaatttttgacagattttcatatgaaagtt |
12591798 |
T |
|
| Q |
314 |
tgcagttcctcagacaaatatattctacatgtgaagattgca |
355 |
Q |
| |
|
||||||| | || ||||||||| | ||||| ||||||||||| |
|
|
| T |
12591797 |
tgcagtttcccacacaaatatactttacatttgaagattgca |
12591756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 115; Significance: 4e-58; HSPs: 3)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 14 - 408
Target Start/End: Original strand, 209641 - 210034
Alignment:
| Q |
14 |
atcaagaagaatatcaaatacattaaaaattaaatacaaaatatatcataacctgatttagtaatttgcttttgcacggtgaagtcaatgatttgcagtt |
113 |
Q |
| |
|
|||||||||||||| ||||| | || |||| ||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
209641 |
atcaagaagaatataaaatatagtacaaataaaagg-aaaataaatcataacctgatttagtaatttgcttttgcacgacgaagtcaatgatatgcagtt |
209739 |
T |
|
| Q |
114 |
taatgcagataatgtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcg |
213 |
Q |
| |
|
|| ||||||||| || |||||||||| |||||||||| |||||| |||||| ||| ||| | ||||| ||| || || ||| | | ||| | |||| |
|
|
| T |
209740 |
tagtgcagataacattcttaagcatggaggaatccctttaatttcttgaagtgccttacaatcatccaagacgagtttccacaaagatttacaatattcg |
209839 |
T |
|
| Q |
214 |
atagattttggaagaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatt |
313 |
Q |
| |
|
|||||||| |||| | | |||| || ||| | |||||||||||||||||||||||| ||| ||||| |||| |||||| |||||||||||||| | |
|
|
| T |
209840 |
atagatttaggaattactgtgaagtgattactagttaggtgtaattctttcacattagcaaataacataagactttttgacagatattcatctgaaagat |
209939 |
T |
|
| Q |
314 |
tgcagttcctcagacaaatatattctacatgtgaagattgcattgggctctctttttcttcagcctggatggtagattcagccagttttgacatc |
408 |
Q |
| |
|
|||| |||| | ||||||||| | ||||||| |||||||||||| | || ||||||||||| || ||||||| ||||||||||| |||||||| |
|
|
| T |
209940 |
tgcacctcctgacacaaatatactttacatgtaaagattgcattgtgttcactttttcttcattcttgatggtaaattcagccagtgttgacatc |
210034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 457 - 528
Target Start/End: Original strand, 236354 - 236425
Alignment:
| Q |
457 |
aatgtttgaggcggagtaagattttgaaatggaaacggcaattcttgtatgagagtattatccaagtgaagt |
528 |
Q |
| |
|
||||||| ||| ||||||||||||| ||| |||||| ||||||||| ||||||||| | ||||||| ||||| |
|
|
| T |
236354 |
aatgtttcaggtggagtaagattttaaaacggaaacagcaattcttttatgagagtttcatccaagagaagt |
236425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 472 - 512
Target Start/End: Original strand, 210083 - 210123
Alignment:
| Q |
472 |
gtaagattttgaaatggaaacggcaattcttgtatgagagt |
512 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||| |||| |
|
|
| T |
210083 |
gtaagatttttaaatggaaacggcaattcttttatgggagt |
210123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 127 - 358
Target Start/End: Original strand, 5918822 - 5919053
Alignment:
| Q |
127 |
gtttttaagcatggtggaatcccttcaatttcctgaagttcctcacagttatccaggacaagcctctgtaaaaaatgacatttttcgatagattttggaa |
226 |
Q |
| |
|
||||||||| ||| |||||||||| ||||||||||| | |||||||||||||| || |||| ||| |||||| || |||||||| || | || || | |
|
|
| T |
5918822 |
gtttttaagtttggcggaatccctttgatttcctgaagattctcacagttatccaagaaaagcttctataaaaagtggcatttttcaatgcagttgggga |
5918921 |
T |
|
| Q |
227 |
gaattttgaattggttatcacttaggtgtaattctttcacattagtaaacaacatgagacccgttgacaaatattcatctgaaaatttgcagttcctcag |
326 |
Q |
| |
|
|||| | |||| | |||||||| ||||||||| ||||||| |||| |||| ||||| ||| ||| ||||||| |||| |||||||||| | |
|
|
| T |
5918922 |
gaatggtaaatttactccaacttaggtataattctttaacattagcaaaccacataagaccgattgccaatgattcatcagaaaggttgcagttccagac |
5919021 |
T |
|
| Q |
327 |
acaaatatattctacatgtgaagattgcattg |
358 |
Q |
| |
|
|| || | ||||||| |||||||| ||||||| |
|
|
| T |
5919022 |
acgaagaaattctacttgtgaagactgcattg |
5919053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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