View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12075_high_1 (Length: 836)
Name: NF12075_high_1
Description: NF12075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12075_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 369 - 816
Target Start/End: Original strand, 5074909 - 5075351
Alignment:
| Q |
369 |
cttaatagttgaactagattaatagactaacagtagaaggagtacaatcatttaacagatagaaggaaacataataaaatatgaagtcgtttatataatg |
468 |
Q |
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| T |
5074909 |
cttaatagatgaactagattaatagactaacagtagaaggagtacaatcatttaacagatagaaggaaacataataaaatatgaagtcgtttatataatg |
5075008 |
T |
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| Q |
469 |
attaagtacacgtgtggcaggtcctatccccgtgcttctgtttgtattcattgaaattgacgtatttgttggt---ttgcgttgtatgacattagcatat |
565 |
Q |
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| T |
5075009 |
attatgtacacgtgtggcaggtcctatccccgtgcttctgtttgtattcattgaaattgacgtatttgtttgttggttgcgttgtttgaca-taacatat |
5075107 |
T |
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| Q |
566 |
tgatnnnnnnnnnnnnnnnnnntttaaatttattttgagtttgaaagttttttaaaatgtcttacataaaccatctcttcgtccaaaatctatacatatn |
665 |
Q |
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| T |
5075108 |
tgat--------aaaaaaaacatttaaatttattttgagtttgaaagtcttttaaaatgtctt-cataaaccatctcttcgtccaaaatctatacatata |
5075198 |
T |
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| Q |
666 |
nnnnnnnttattcgttgcttatttatttcatccatatattattttgtggtgctgcatgtattgcgttgccattttctaaagggtttgattggttatag-- |
763 |
Q |
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| T |
5075199 |
aaaaaaattattcgttgcttatttatttcatccatatattattttgtggtgctgcatgtattgcgttgccattttctaaagggtttgattggttatagaa |
5075298 |
T |
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| Q |
764 |
aaaaaataataataagagggttgttatatattttaggtcaaataccatgtttg |
816 |
Q |
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| T |
5075299 |
aaaaaataataataagagggttggtatatattttaggtcaaatatcatgtttg |
5075351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 6e-64
Query Start/End: Original strand, 47 - 199
Target Start/End: Original strand, 5074486 - 5074638
Alignment:
| Q |
47 |
atctttactgatgacaattgggtcaaacgaaagaaactaaactcttacaatatgataaactaagattcaaatatcaagtgaagagctatcaaatggatcg |
146 |
Q |
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||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
5074486 |
atctttactaataacaattgggtcaaacaaaagaaactaaactcttacaatatgataaactaagattcaaatatcaagtgaagaactattaaatggatcg |
5074585 |
T |
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| Q |
147 |
aacataggtcttgtccatttgattaccttcataatcggataaagaagtgaaca |
199 |
Q |
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| T |
5074586 |
aatataggttttgtccatttgattaccttcataatcggataaagaagtgaaca |
5074638 |
T |
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