View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12075_high_5 (Length: 393)
Name: NF12075_high_5
Description: NF12075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12075_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 330
Target Start/End: Complemental strand, 34382366 - 34382041
Alignment:
| Q |
1 |
cgttttctctctatatattctcccaccaaagaagaagataaatgtgaaattccttcaaaaagagataaatgcatgtgaaatctatttacccagcaaaaag |
100 |
Q |
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| T |
34382366 |
cgttttctctctctatatactcccaccaaagaagaagataattgtgaaattccttcaaaaagagataaatg----tgaaatctattttcccagcaaaaag |
34382271 |
T |
|
| Q |
101 |
aaatctatcatctttcacacaaaaaaccgaaacacacttcaatactcattttttaagaaagctcaaacacaacagctaagccaattactttcctatgaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34382270 |
aaatctatcatctttcacacaaaaaaccgaaacacacttcaacactcattttttaagaaagctcaaacacaacagctaagccaattactttcctatgaat |
34382171 |
T |
|
| Q |
201 |
ccatttagtttcatcatcaccaatctccttctttgcacaaaccagtaaccaccaaaaattcaacattggaccaacatcaaccgcggccacggatggtacc |
300 |
Q |
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| T |
34382170 |
ccatttaatttcatcatcatcaatctccttctttgcacaaaccagttaccaccaaaaattcaacattggaccaacatcaaccgcggccacggatagtacc |
34382071 |
T |
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| Q |
301 |
atccagccaccctcagggtccatgtattca |
330 |
Q |
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| T |
34382070 |
atccagccaccctcagggtccatgtattca |
34382041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 34367776 - 34367666
Alignment:
| Q |
73 |
atgtgaaatctatttacccagcaaa-aagaaatctatcatctttcacacaaaaaaccgaaacacacttcaatactcattttttaagaaagctcaaacaca |
171 |
Q |
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||||||||| ||||||| |||||| |||||| | ||||| ||||||||||||||||||||||| |||| | |||||||||||| ||||||| ||||||| |
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| T |
34367776 |
atgtgaaatatatttactcagcaagcaagaaa-caatcatttttcacacaaaaaaccgaaacacccttcgacactcattttttatgaaagctaaaacaca |
34367678 |
T |
|
| Q |
172 |
acagctaagcca |
183 |
Q |
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||| |||||||| |
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| T |
34367677 |
acatctaagcca |
34367666 |
T |
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