View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12075_high_6 (Length: 383)
Name: NF12075_high_6
Description: NF12075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12075_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 42116435 - 42116202
Alignment:
| Q |
12 |
atgaaatcttatgataggcaatctcaactgaaaaagtaaatcaaggtggttgttacacgtgcattgactgtttcataatgttacaacaatattccatgta |
111 |
Q |
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| T |
42116435 |
atgaaatcttatgataagcagtctcaactgaaaaagtaaatcaaggtggttgttacacgtgcattgactgtttcataatgttacaacaatattccatgta |
42116336 |
T |
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| Q |
112 |
ttatgatcatgttaccttagcttctccgtaaatcaaaatttacatcaattctttatcatacaacaaacaagtgttactaatacactcaacatgaataata |
211 |
Q |
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| T |
42116335 |
ttatgatcatgttaccttagcttctccgtaaatcaaaatttacatcaattctttatcatacaacatacaagtgttactaatacactcaacataaataata |
42116236 |
T |
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| Q |
212 |
-nnnnnnngtagaacacaaagcaaattaaatcta |
244 |
Q |
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| T |
42116235 |
ttttttttgtagaacacaaagcaaattaaatcta |
42116202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 277 - 367
Target Start/End: Complemental strand, 42116169 - 42116079
Alignment:
| Q |
277 |
aaaaacccctccttgaagaatggacattattttgtttatatgatactccaagattgattgattgtattttaagcaacttggcataataatt |
367 |
Q |
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| T |
42116169 |
aaaaacccctccttgaagaatggacattattttgtttatatgatactccaagattgattgattgtattttaagaaacttggcataataatt |
42116079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 283 - 364
Target Start/End: Complemental strand, 32007486 - 32007406
Alignment:
| Q |
283 |
ccctccttgaagaatggacattattttgtttatatgatactccaagattgattgattgtattttaagcaacttggcataata |
364 |
Q |
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| T |
32007486 |
ccctccttgaagaatggacattattttgttt-tccaatactccaagattgattgattgtattttaagcaacttggcataata |
32007406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 138 - 202
Target Start/End: Complemental strand, 32007675 - 32007611
Alignment:
| Q |
138 |
cgtaaatcaaaatttacatcaattctttatcatacaacaaacaagtgttactaatacactcaaca |
202 |
Q |
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| T |
32007675 |
cgtaaatcaaaatttacatcaattctttatcatacaacagacaagtgttgctaatacactcaaca |
32007611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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