View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12075_low_2 (Length: 670)

Name: NF12075_low_2
Description: NF12075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12075_low_2
NF12075_low_2
[»] chr1 (3 HSPs)
chr1 (99-492)||(28927246-28927635)
chr1 (559-667)||(28927701-28927809)
chr1 (310-385)||(14287953-14288028)
[»] chr7 (6 HSPs)
chr7 (314-385)||(30597242-30597313)
chr7 (310-385)||(45493095-45493170)
chr7 (310-358)||(6845153-6845201)
chr7 (310-386)||(6849699-6849775)
chr7 (310-383)||(32414626-32414699)
chr7 (310-361)||(6890160-6890211)
[»] chr4 (1 HSPs)
chr4 (310-383)||(52187789-52187862)
[»] chr8 (1 HSPs)
chr8 (313-388)||(27700913-27700988)
[»] chr3 (1 HSPs)
chr3 (312-383)||(7119797-7119868)
[»] scaffold0210 (1 HSPs)
scaffold0210 (568-662)||(15600-15694)
[»] chr5 (2 HSPs)
chr5 (310-384)||(25216876-25216950)
chr5 (310-384)||(25281031-25281105)
[»] chr2 (1 HSPs)
chr2 (310-383)||(43863135-43863208)


Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 99 - 492
Target Start/End: Original strand, 28927246 - 28927635
Alignment:
Q  99 taatctaagatgttaacctccgttgatggtgagtttttgaaacaaaaagtcaattggtccatcagttagatgtgaagatggtttcaatgctgcattaaat 198  Q
    |||||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28927246 taatctaagatgttaacctctgttgatggtgaatttt-gaaacaaaaagtcaattggtccatcagttagatgtgaagatggtttcaatgctgcattaaat 28927344  T
Q  199 gcttctcgaaactttgcatcttctttccatgacttggtagttgcttgctataacttggcatctctcagtatctcggattttgaaatgaaagatgaattaa 298  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28927345 gcttctcaaaactttgcatcttctttccatgacttggtagttgcttgctctaacttggcatctctcagtatctcggattttgaaatgaaagatgaattaa 28927444  T
Q  299 tttttacatctagtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaatgaagggtgagaggat 398  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28927445 tttttacatctagtgacttcaatttacacaaggaatggaactcaaccttgaataaatcaggaattaaggtgagaacctaatcaatgaagggtgagaggat 28927544  T
Q  399 cagtttaatgcacaccatatactacctttgatgaaatttcgggaaacaaaaaggaaaaagatctttcatcatttcagcaacaaatagtagagaa 492  Q
    |||||||||||||||||||   |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28927545 cagtttaatgcacaccata---tacctttgacaaaatttcgggaaacaaaaaggaaaaagatctttcatcatttcagcaacaaatagtagagaa 28927635  T

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Target: chr1; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 559 - 667
Target Start/End: Original strand, 28927701 - 28927809
Alignment:
Q  559 atagcaggctctaaggtacctcaagagttcttgaagtgattgtcaaccatttgatattagcaagttgtagcagccagcttagtagaatcaaaggagtatc 658  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  28927701 atagcaggctctaaggtacctcaagagttcttgaagtgattgtcaaccatttgatattagcaagttctagcagccagcttggtagaatcaaaggagtatc 28927800  T
Q  659 cgcatcatt 667  Q
    |||||||||    
T  28927801 cgcatcatt 28927809  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 310 - 385
Target Start/End: Original strand, 14287953 - 14288028
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaatga 385  Q
    ||||||||||| |||| ||| ||| ||||||| | ||| ||||||||||| ||| ||| |||||||||||||||||    
T  14287953 agtgacttcaaattacgcaaagaagggaactcaatcttcaataaatcaggtattgaggagagaacctaatcaatga 14288028  T

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Target: chr7 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 314 - 385
Target Start/End: Original strand, 30597242 - 30597313
Alignment:
Q  314 acttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaatga 385  Q
    ||||||| |||||||||||||||||||| ||||| ||||||||||||| ||| | |||||||||||||||||    
T  30597242 acttcaagttacacaaggaatggaactcaaccttcaataaatcaggaactaacgagagaacctaatcaatga 30597313  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 310 - 385
Target Start/End: Original strand, 45493095 - 45493170
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaatga 385  Q
    ||||||||||| |||| ||| ||| ||||||||| ||| ||||||||||| ||| ||| |||||||||||||||||    
T  45493095 agtgacttcaaattacgcaaagaagggaactcgatcttcaataaatcaggtattgaggagagaacctaatcaatga 45493170  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 358
Target Start/End: Complemental strand, 6845201 - 6845153
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcag 358  Q
    ||||||||||| |||||||||||||||||||| ||||| ||||||||||    
T  6845201 agtgacttcaaattacacaaggaatggaactcaaccttcaataaatcag 6845153  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 310 - 386
Target Start/End: Complemental strand, 6849775 - 6849699
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaatgaa 386  Q
    ||||||||||| |  |||||||||||||| || ||||| ||||||||||||| ||||| |||||||| || ||||||    
T  6849775 agtgacttcaagtcccacaaggaatggaattcaaccttcaataaatcaggaactaaggagagaacctgataaatgaa 6849699  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 32414699 - 32414626
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaat 383  Q
    ||||||||||| |||||||||||| | ||||  ||||| |||||||||||||  ||||  ||||||||||||||    
T  32414699 agtgacttcaagttacacaaggaaggcaacttcaccttcaataaatcaggaaccaaggaaagaacctaatcaat 32414626  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 6890211 - 6890160
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaa 361  Q
    |||||||||||  ||||||||||||| ||||| ||||| |||||||||||||    
T  6890211 agtgacttcaagctacacaaggaatgaaactcaaccttcaataaatcaggaa 6890160  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 310 - 383
Target Start/End: Complemental strand, 52187862 - 52187789
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaat 383  Q
    |||||||||||  ||||||||||||||||||| ||||| ||||||||||||| ||| |  ||||||||| ||||    
T  52187862 agtgacttcaaggtacacaaggaatggaactcaaccttcaataaatcaggaactaaagaaagaacctaagcaat 52187789  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 27700913 - 27700988
Alignment:
Q  313 gacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaatgaagg 388  Q
    |||||||| ||||| ||||||   ||||| ||||| ||||||||||||| || || |||||||||| |||||||||    
T  27700913 gacttcaagttacataaggaagaaaactcaaccttcaataaatcaggaactacggagagaacctaagcaatgaagg 27700988  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 312 - 383
Target Start/End: Complemental strand, 7119868 - 7119797
Alignment:
Q  312 tgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaat 383  Q
    ||||||||| |||||||||||| | | ||  ||||| ||||||||||||| ||||| |||||||||| ||||    
T  7119868 tgacttcaagttacacaaggaaggtagcttaaccttcaataaatcaggaactaaggagagaacctaagcaat 7119797  T

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Target: scaffold0210 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 568 - 662
Target Start/End: Original strand, 15600 - 15694
Alignment:
Q  568 tctaaggtacctcaagagttcttgaagtgattgtcaaccatttgatattagcaagttgtagcagccagcttagtagaatcaaaggagtatccgca 662  Q
    |||||| ||||| |||||| ||||||| || ||||||  ||||||||||||  || |  | ||||||||  ||||||| ||||||||||||||||    
T  15600 tctaagatacctgaagagtacttgaagggactgtcaatgatttgatattagtgagctcgaccagccagcgaagtagaaccaaaggagtatccgca 15694  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 25216950 - 25216876
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaatg 384  Q
    ||||||||||| ||| |||||| | ||||||| ||||| |||||||  |||| || || ||||||||||||||||    
T  25216950 agtgacttcaagttatacaaggtagggaactcaaccttcaataaatttggaactagggagagaacctaatcaatg 25216876  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 310 - 384
Target Start/End: Complemental strand, 25281105 - 25281031
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaatg 384  Q
    ||||||||||| ||| |||||| | ||||||| ||||| |||||||  |||| || || ||||||||||||||||    
T  25281105 agtgacttcaagttatacaaggtagggaactcaaccttcaataaatttggaactagggagagaacctaatcaatg 25281031  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 383
Target Start/End: Original strand, 43863135 - 43863208
Alignment:
Q  310 agtgacttcaatttacacaaggaatggaactcgacctttaataaatcaggaattaaggtgagaacctaatcaat 383  Q
    ||||||||||| |||||||||||| ||| ||| ||||| |||||| || ||| |||||  ||||||||| ||||    
T  43863135 agtgacttcaagttacacaaggaagggagctctaccttcaataaaccacgaactaaggaaagaacctaagcaat 43863208  T

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