View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12075_low_3 (Length: 581)
Name: NF12075_low_3
Description: NF12075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12075_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 21 - 571
Target Start/End: Complemental strand, 2784456 - 2783905
Alignment:
| Q |
21 |
aagaattggtaaccgacctcatttgagcaggtgagaaggtacagagtaattgttaaatgccaaaattcacatattagtattatgtttaatgtacttgttt |
120 |
Q |
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| T |
2784456 |
aagaattgctaaccgacctcatttgagcaggtgagaaggtacagagtaattgttaaatgccaaaattcatatgttagtattatgtttaatgtccttgttt |
2784357 |
T |
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| Q |
121 |
gttttgttagttacatgtaaccgatgtctttaagatgttggttaacaattatgtgcatgcatggtaatgtcagtattattgaaaat--gaagttgttcct |
218 |
Q |
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| T |
2784356 |
gttttgttagttacatgtaaccgatgtctttaagatgttggttaacaattatgtgcatg----gtaatgtcagtattattgaaaatatgaagttgttcct |
2784261 |
T |
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| Q |
219 |
aagttaagtgt--------ttgaagtgcaggtatagttatcttgataaccttaacctatgttgcatttagatttaaatatatttttaatcacaggtttag |
310 |
Q |
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| T |
2784260 |
aagttaagtgtagtcaagtttgaagtgcaggta--gttttcttgataaccttaacctatgttgcatttagatttaaatatatttttaatcacaggtttag |
2784163 |
T |
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| Q |
311 |
tagtaaccttttcattgtcattcgttgagcttctttagtat---atagaaccctttgttaaacattagtagtttgaaaaccaaagttgaagggtcttcaa |
407 |
Q |
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| T |
2784162 |
tagtaaccttttcattgtcattcgttgagcttcttgagtatataatagaaccctttgttaaacattagtagtttgaaaaccaaagttgaagggtcttcaa |
2784063 |
T |
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| Q |
408 |
aa-tttctcttcttccaattaacctcctannnnnnnnnagtacaacgcaattaacctagaattattgtgttttacaatctattacgtagaaaataggcca |
506 |
Q |
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| T |
2784062 |
aattttctcttcttccaattaacctccta--tttttttagtacaacgcaattaacctagaattattgtgttttgcaatctat----tagaaaataggcca |
2783969 |
T |
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| Q |
507 |
actcatatcgtgaacgaattaattatctatttagcaccaacacgattgaaggtgtgtgatgtcca |
571 |
Q |
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| T |
2783968 |
actcatgt-gtgaacgaattaattatctatttagcaccaacacgattgaaggtgtgtggtgtcca |
2783905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 410
Target Start/End: Original strand, 17407405 - 17407460
Alignment:
| Q |
354 |
agaaccctttgttaaacattagtagtttgaaaaccaaagttgaagggtcttcaaaat |
410 |
Q |
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| T |
17407405 |
agaaccctttgctaaacattagtattttg-aaaccatagttgaagcgtcttcaaaat |
17407460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 4050420 - 4050366
Alignment:
| Q |
354 |
agaaccctttgttaaacattagtagtttgaaaaccaaagttgaagggtcttcaaaa |
409 |
Q |
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| T |
4050420 |
agaaccctttgctaaacattagtagtttg-aaccccaagttgaagggtcttaaaaa |
4050366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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