View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12075_low_4 (Length: 468)
Name: NF12075_low_4
Description: NF12075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12075_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 43600179 - 43600561
Alignment:
| Q |
21 |
tatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtacta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600179 |
tatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtacta |
43600278 |
T |
|
| Q |
121 |
gtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttct |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43600279 |
gtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttct |
43600378 |
T |
|
| Q |
221 |
gttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600379 |
gttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctat |
43600478 |
T |
|
| Q |
321 |
caactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43600479 |
caactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
43600561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 43605671 - 43606053
Alignment:
| Q |
21 |
tatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtacta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605671 |
tatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtacta |
43605770 |
T |
|
| Q |
121 |
gtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttct |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43605771 |
gtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttct |
43605870 |
T |
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| Q |
221 |
gttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctat |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605871 |
gttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctat |
43605970 |
T |
|
| Q |
321 |
caactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43605971 |
caactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
43606053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 21 - 403
Target Start/End: Original strand, 43611163 - 43611545
Alignment:
| Q |
21 |
tatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtacta |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611163 |
tatgttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtacta |
43611262 |
T |
|
| Q |
121 |
gtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttct |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
43611263 |
gtaactggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacaacaattccctttcctccttcaatgtcatttgtattttct |
43611362 |
T |
|
| Q |
221 |
gttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctat |
320 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611363 |
gttttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctat |
43611462 |
T |
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| Q |
321 |
caactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43611463 |
caactggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtgg |
43611545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 24 - 452
Target Start/End: Complemental strand, 55338231 - 55337810
Alignment:
| Q |
24 |
gttaggtgcaggctcaatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttgtactagta |
123 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55338231 |
gttaggtgcaggctcgatagaaatggccaatcctaatttagttgtatgttttaaatagagtaagggagagcaggtggcattcggttattttg-------a |
55338139 |
T |
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| Q |
124 |
actggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatgtcatttgtattttctgtt |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
55338138 |
actggttggttggaaaagactaggctccttgtttcctagcagtttgtggaagttcacagcaattccctttcctccttcaatttcatttgtattttctgtt |
55338039 |
T |
|
| Q |
224 |
ttcaatgcataaccaactcaaaaggaaggattattcccaaagttttattaataaataagtcctgttcagtattcgtacgaatcctacaaggttctatcaa |
323 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
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| T |
55338038 |
ttcaatgcataaccaactcaaaaggaaggattattcccagagttttattaataaataagtcctgttcagtattagtacgaatcttacaaggttctatcaa |
55337939 |
T |
|
| Q |
324 |
ctggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgcttttgggaagacgacggtggatgaacatgaacgattaatc |
423 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
55337938 |
ctggtatcagaagtacacgatcctggcagcagcttgatgtcttcttttgagtgtggatgctttggggaagacgacggtggatgaacatgaacgattaatc |
55337839 |
T |
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| Q |
424 |
tgagtgtattttttcttttcttctctgtg |
452 |
Q |
| |
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||||||||||||| ||||||||||||||| |
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| T |
55337838 |
tgagtgtatttttccttttcttctctgtg |
55337810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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