View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12076_high_1 (Length: 406)
Name: NF12076_high_1
Description: NF12076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12076_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 13 - 274
Target Start/End: Complemental strand, 30400448 - 30400188
Alignment:
| Q |
13 |
agtaacatctaaatccttaacaggttggtataatcacattacactatnnnnnnntccaatcacattataagcataatgaagaaataacgagataagaaaa |
112 |
Q |
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| T |
30400448 |
agtaacatctaaatccttaacaggttggtataatcacattacact-taaaaaaatccaatcaaattataagcataatgaagaaataacaagataagaaaa |
30400350 |
T |
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| Q |
113 |
agttgaaaaaacagtaacattatgaaaattaaggaacaacctgctcctcattatcactgtcttgagatccagaacatgttccaagacaagaagaatgaaa |
212 |
Q |
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| T |
30400349 |
agttgaaaaaacagtaacattatgaaaattaaggaacaacctgttcctcattatcactgtcatgagatccagaacatgttccaagacaagaagaatgaaa |
30400250 |
T |
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| Q |
213 |
ccctttcagtccctttgaactactcttcctagtggctttactactattggaacccatgaccc |
274 |
Q |
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| T |
30400249 |
ccctttcagtccctttgaactactcttcctagtggctttgctactattggaacccatgaccc |
30400188 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 328 - 388
Target Start/End: Complemental strand, 30400134 - 30400074
Alignment:
| Q |
328 |
tgctgtcttttttagattctggaagatgggtgagatctataatgaagtaaaactaaactac |
388 |
Q |
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| T |
30400134 |
tgctgtcttttttagattccggaagatgggtgagatctataatgaagtaaaactaaactac |
30400074 |
T |
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