View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12076_high_1_N (Length: 426)
Name: NF12076_high_1_N
Description: NF12076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12076_high_1_N |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 30 - 401
Target Start/End: Original strand, 36938129 - 36938500
Alignment:
| Q |
30 |
acatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccg |
129 |
Q |
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| T |
36938129 |
acatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccg |
36938228 |
T |
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| Q |
130 |
atcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaagagatggaagtggtattggtctcatgagcagcgttcaatt |
229 |
Q |
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| T |
36938229 |
atcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaagagatggaagtggtattggtctcatgagcagcgttcaatt |
36938328 |
T |
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| Q |
230 |
agctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgat |
329 |
Q |
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| T |
36938329 |
agctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattgat |
36938428 |
T |
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| Q |
330 |
gttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatgttgat |
401 |
Q |
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| T |
36938429 |
gttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatgttgat |
36938500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 36948376 - 36948739
Alignment:
| Q |
30 |
acatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccg |
129 |
Q |
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| T |
36948376 |
acatattcaaaattgtttcatctttggaacattaacacaagtgaagtcacagatttcactactcgtttctcattttctatcaacacccccaacaaaagtt |
36948475 |
T |
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| Q |
130 |
atcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttccaag-agatggaagtggtattggtctcatgagcagcgttcaat |
228 |
Q |
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| T |
36948476 |
atcatggagatggcatcaccttctatttggcacgccccaattttcc--ta--tgtcccaaatagatggaagtggtatcggtctagcgagccgtgttcaat |
36948571 |
T |
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| Q |
229 |
tagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattga |
328 |
Q |
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| T |
36948572 |
tgagtaatccaaattacacaaaagaaaatccatttgtagctgtggaatttgatacatttgttaatgactgggatcctaaatatgatcatgttgggattga |
36948671 |
T |
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| Q |
329 |
tgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatg |
396 |
Q |
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| T |
36948672 |
tgttaattctatcagcactaatcacactacacaatggttcactagcatggatgaaagaggatatgatg |
36948739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 30 - 396
Target Start/End: Original strand, 36958510 - 36958873
Alignment:
| Q |
30 |
acatattcaaaactatttcatctttggaacataaacacgagtgaagtcacggattttactactcgtttctcatttactatcaacaccctcaacaaaaccg |
129 |
Q |
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|||||||||||| | |||||||||||| ||||||| || || |||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||| |
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| T |
36958510 |
acatattcaaaattgtttcatctttgggacataaaaacaagcgaagtcacagatttcaatactcgtttctcatttactatcaacacccccaacaaaaccc |
36958609 |
T |
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| Q |
130 |
atcattcagatggaatcaccttctatttggcacaccccaattttccactacctgttcc-aagagatggaagtggtattggtctcatgagcagcgttcaat |
228 |
Q |
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| T |
36958610 |
atcatgcagatggcatgaccttctatttggcacaccccaattttcc----catgtcccaaatatatggaggcggaatcggtcttgcgagccttgttcaat |
36958705 |
T |
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| Q |
229 |
tagctactccaaattacacaaaagaaaatccctttgtggctgtggaatttgatacatttgtcaatacatgggatcctacatatgatcatgtggggattga |
328 |
Q |
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| T |
36958706 |
tgagtaatccagattacacaaaagaaaatccatttgtagctgtggaatttgatacatttgttaatgaatgggatcctaactatgatcatgttgggattga |
36958805 |
T |
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| Q |
329 |
tgttaattcaatcagtacttcttacacaacccaatggttcactagcttggacgaaagaggatatgatg |
396 |
Q |
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||||||||| ||||| ||| | || | || ||||||||||||||| |||| |||||||||||||||| |
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| T |
36958806 |
tgttaattctatcagcactaatcacgctacacaatggttcactagcatggatgaaagaggatatgatg |
36958873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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