View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12076_high_5 (Length: 301)

Name: NF12076_high_5
Description: NF12076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12076_high_5
NF12076_high_5
[»] chr2 (8 HSPs)
chr2 (13-301)||(11119116-11119404)
chr2 (18-301)||(11111345-11111628)
chr2 (30-301)||(10793178-10793449)
chr2 (56-301)||(11156597-11156842)
chr2 (57-301)||(11137655-11137899)
chr2 (172-301)||(11145960-11146089)
chr2 (57-301)||(11149929-11150173)
chr2 (191-249)||(11183613-11183671)


Alignment Details
Target: chr2 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 13 - 301
Target Start/End: Complemental strand, 11119404 - 11119116
Alignment:
Q  13 attctgaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaat 112  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119404 attctgaggtcacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaat 11119305  T
Q  113 attacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgtt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11119304 attacccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgtt 11119205  T
Q  213 gagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||    
T  11119204 gagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaatttatcgggagttgttgg 11119116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 301
Target Start/End: Complemental strand, 11111628 - 11111345
Alignment:
Q  18 gaggccacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattac 117  Q
    ||||||||| |  |||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||| ||||||||  |||||||||    
T  11111628 gaggccacaatgccaagatccaattcagaagatttcttgttaataaaattgcattgttttctaatttctcctttctttccggtaagcacatcaatattac 11111529  T
Q  118 ccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaa 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| | ||| ||||| ||||||||||||||||||||||||||||||||||||||||    
T  11111528 ccattttaatcattgaatttataaagttctgaaagaaaacattttggctatttgcaaagctgttgacaatgctaatggtatctgcacccggtgttgagaa 11111429  T
Q  218 caattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg 301  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| |||||    
T  11111428 taattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgg 11111345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 30 - 301
Target Start/End: Original strand, 10793178 - 10793449
Alignment:
Q  30 gcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatca 129  Q
    |||||||| || ||||||||||| ||||||||||||||||| || || || ||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  10793178 gcaagatctaactcagaagattttttgttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatca 10793277  T
Q  130 ttgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtc 229  Q
    |||  ||  ||||| |||  |||||| || ||||||| ||  ||||||| || ||||||||| |||||||||||   |||||||| ||||||||||||||    
T  10793278 ttgctttcttaaagctctcaaagaaagcactttggttattggcaaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtc 10793377  T
Q  230 actttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg 301  Q
    |||||||||||||||||||||| | ||||||||||||||| |||||||||| ||| |||||||||| |||||    
T  10793378 actttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgg 10793449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 56 - 301
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
Q  56 gttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa 155  Q
    ||||||||| ||||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| |    ||||| |||  ||||||    
T  11156842 gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa 11156743  T
Q  156 acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt 255  Q
     | ||||| | | | |  || ||||||||||||||||||||||||||||| | |||||||||||| ||||| |||||||| ||||| ||||||||  |||    
T  11156742 gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt 11156643  T
Q  256 gaagattgttgtagtagttcttgtctaatttatcaggagttgttgg 301  Q
    ||||||||  ||| ||||||||||| |||||||||||||| |||||    
T  11156642 gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg 11156597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 57 - 301
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
Q  57 ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa 156  Q
    |||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| |    |  |||| | |  ||||||     
T  11137899 ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag 11137800  T
Q  157 cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg 256  Q
    |||||| ||     |  || ||||||||||||||||||||||| ||||| | ||| ||||| |  ||||||||||| |||||||||||||||||||| ||    
T  11137799 catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg 11137700  T
Q  257 aagattgttgtagtagttcttgtctaatttatcaggagttgttgg 301  Q
    |||||||  ||||||||||||||| |||||||||||||| |||||    
T  11137699 aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg 11137655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 172 - 301
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
Q  172 caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta 271  Q
    |||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| |||||  ||||||||||   ||| ||    
T  11146089 caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata 11145990  T
Q  272 gttcttgtctaatttatcaggagttgttgg 301  Q
    ||||||||| |||||||||||||| |||||    
T  11145989 gttcttgtcaaatttatcaggagtagttgg 11145960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 57 - 301
Target Start/End: Complemental strand, 11150173 - 11149929
Alignment:
Q  57 ttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa 156  Q
    |||||||| ||||| || |||||||| |||||||  || ||||| | ||| |||||||| |||||||| ||||| | |    ||||| |||  || |||     
T  11150173 ttaacaaagttgcattgttttctaatctctccttgtttcccagttaacacaccaatatttcccattttgatcatagcagccttaaagctctcaaaaaaag 11150074  T
Q  157 cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg 256  Q
    | ||||| | | || |||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| ||||||||||||||  ||||    
T  11150073 ctttttgatcggttgcaaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttg 11149974  T
Q  257 aagattgttgtagtagttcttgtctaatttatcaggagttgttgg 301  Q
    ||||||   ||| ||||||||||| |||||||||||||| |||||    
T  11149973 aagattagagtaatagttcttgtcaaatttatcaggagtcgttgg 11149929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 249
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
Q  191 aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt 249  Q
    ||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| |||||||    
T  11183613 aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt 11183671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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