View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_high_10 (Length: 431)
Name: NF12077_high_10
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 7223149 - 7223551
Alignment:
| Q |
1 |
aatggaaactatggcgcgtgaaactcgattcacatacctctatgatctaggatgttttttagtatcttcttcatctaacatagtacctatctattttgtc |
100 |
Q |
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| T |
7223149 |
aatggaaactat--cgcgtgaaactcgattcacatacctctatgatctaggatgtttt-tagtatcttcttcatctaacatagtacctatctattttgtc |
7223245 |
T |
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| Q |
101 |
ttttatttgtatatatataatcataataactcgtcaatgttcagatcaaatatttggattcttgtttgaggacttataatatgcagtgaggttt------ |
194 |
Q |
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| T |
7223246 |
ttttatttgtatatatataatcataataactcgtcaatgttcagatcaagtatttggattcttgtttgaggccttataatatgcagtgtttatttattaa |
7223345 |
T |
|
| Q |
195 |
--gaaccgcaacccgg---ctagcctttggtttctccggcgagttgagtttcagtggagctgctgcctgcgttttgataagatcattagtcatttaagtt |
289 |
Q |
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| T |
7223346 |
tggaaccgcaacccggcacctagcctttggtttctccggcgagttgagtttcagtggagctgctgcctgcgttttgataagatcattagtcatttaag-- |
7223443 |
T |
|
| Q |
290 |
tttaaccattcttctaatcaaatgaactttggtaaggaaatgatcatcatttttagaacattcttctaatcacattaacattggcaaggtat-tattagt |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||||||| ||||||| |
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| T |
7223444 |
tttaaccattcttctaatcaaatgaactttggtaaggaaatgatcatcaactttagaacattcttctaatcacataaacattggtaaggtatgtattagt |
7223543 |
T |
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| Q |
389 |
catctaat |
396 |
Q |
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| T |
7223544 |
catctaat |
7223551 |
T |
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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 206 - 245
Target Start/End: Complemental strand, 11429226 - 11429187
Alignment:
| Q |
206 |
cggctagcctttggtttctccggcgagttgagtttcagtg |
245 |
Q |
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| T |
11429226 |
cggctagcctttggtttctccggcgagttgagtttcagtg |
11429187 |
T |
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