View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_high_11 (Length: 403)
Name: NF12077_high_11
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 399
Target Start/End: Original strand, 5231722 - 5232104
Alignment:
| Q |
18 |
taatggacatagcttccataaaaggatgactcccgtggagactacatttgattggcagtcatacagtgaagagcctgcctactccagtgatgatgattcc |
117 |
Q |
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| T |
5231722 |
taatggacatagcttccataaaaggatgactcccgtggagactacatttgattggcagtcatacagtgaagagcctgcctactccagtgatgacgattcc |
5231821 |
T |
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| Q |
118 |
atcatagcaaatgcactttgggagcaaatcaatgttactcgcgattcttcagattatttgtggtatttgacagagtaagannnnnnnnnaactttcctaa |
217 |
Q |
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| T |
5231822 |
atcatagcaaatgcactttgggagcaaatcaatgttactcgcgattcttcagattatttgtggtatttgacagagtaagatttttttttaactttcctaa |
5231921 |
T |
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| Q |
218 |
cttaaa-cacattaaaaatttggaattttaactattgagtcttgatactaactctattatttatccattttcagtgtcaacattagtcctagtgaaagtt |
316 |
Q |
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| T |
5231922 |
cttaaaacacattaaaaatttggaattttaactattgagtcttgatactaactctattatttatccattttcagtgtcaacattagtcctagtgaaagtt |
5232021 |
T |
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| Q |
317 |
ttattaagaatggtcaatttcctactcttaccataaattcagcaggtcatgttctacatgtttttgttaatggtcaactttca |
399 |
Q |
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| T |
5232022 |
ttattaagaatggtcaatttcctactcttaccataaattcagcaggtcatgttctacatgtttttgttaatggtcaactttca |
5232104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 52548119 - 52548033
Alignment:
| Q |
110 |
atgattccatcatagcaaatgcactttgggagcaaatcaatgttactcgcgattcttcagattatttgtggtatttgacagagtaag |
196 |
Q |
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| T |
52548119 |
atgattccatcacagcatatgcattatgggagcagattaatgtcactagagactctaccgattatttatggtatatgacagagtaag |
52548033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 277 - 329
Target Start/End: Original strand, 17127856 - 17127908
Alignment:
| Q |
277 |
ttatccattttcagtgtcaacattagtcctagtgaaagttttattaagaatgg |
329 |
Q |
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| T |
17127856 |
ttatccttcttcagtgtcaacatcagtcctaatgaaggttttataaagaatgg |
17127908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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