View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_high_13 (Length: 396)
Name: NF12077_high_13
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 362
Target Start/End: Complemental strand, 36053994 - 36053649
Alignment:
| Q |
17 |
cagtgttgcattcttaaagaagcactaaaagaatttattgtgactcacatttatccgaggtgattaattatttgaccttacttttcccggacagggttgt |
116 |
Q |
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| T |
36053994 |
cagtgttgcattcttaaagaagcactaaaagaatttattgtgactcacatttatccgaggtgattaattatttgaccttacttttcccggacagggttgt |
36053895 |
T |
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| Q |
117 |
aagatgctacaaatgtcctgtgaagagcatgataaaatagctgcaaagagccaatttataacacacactataggcaggtaggctgcaatctgaacattaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36053894 |
aagatgctacaaatgtcctgtgaagagcatgataaaatagctgcaaagagccaatttataacacacactataggcaggtaggctgcaatctgagcattaa |
36053795 |
T |
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| Q |
217 |
atcatacatatactgatatacatgctcagcaggtcaaattttgagtttcnnnnnnnattaggacattggcagaaatggacattgagtccacacctattga |
316 |
Q |
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| T |
36053794 |
atcatacatatactgatatacatgctcagcaggtcaaattttgagtttctttttttattaggacattggcagaaatggacattgagtccacacctattga |
36053695 |
T |
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| Q |
317 |
tacaaaaggctttcaaacacttactcaactggtacaccttaaacca |
362 |
Q |
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| T |
36053694 |
tacaaaaggctttcaaacacttactcaactggtacaccttaaacca |
36053649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 36 - 220
Target Start/End: Complemental strand, 805752 - 805569
Alignment:
| Q |
36 |
aagcactaaaagaatttattgtgactcacatttatccgaggtgattaattatttgaccttacttttcccggacagggttgtaagatgctacaaatgtcct |
135 |
Q |
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| T |
805752 |
aagcactaaaagaatttcatgtgtctcagattaatccgaggtgattaattc----accctacttctttttgacagggttgtaagatgctacaaatgtcct |
805657 |
T |
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| Q |
136 |
gtgaagagcatgataaaatagctgcaaagagccaatttataacacac---actataggcaggtaggctgcaatctgaacattaaatca |
220 |
Q |
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| T |
805656 |
gtgaagagcatgataaaatagctgcgaagagccaatttataacacacactactataggcaggtaggctgcactctgagcattaaatca |
805569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 109 - 196
Target Start/End: Complemental strand, 32338258 - 32338171
Alignment:
| Q |
109 |
agggttgtaagatgctacaaatgtcctgtgaagagcatgataaaatagctgcaaagagccaatttataacacacactataggcaggta |
196 |
Q |
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| T |
32338258 |
agggttgcaagatggtagaaatgtcatgtgaggaacatgacaaagcagctgcaaagagtcaatttatcacacacacaataggaaggta |
32338171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 338
Target Start/End: Complemental strand, 32338080 - 32338018
Alignment:
| Q |
276 |
aggacattggcagaaatggacattgagtccacacctattgatacaaaaggctttcaaacactt |
338 |
Q |
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| T |
32338080 |
aggacattggcagaaatggatattaaatccactcctattgacaccaagggctttcaaacactt |
32338018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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