View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_high_15 (Length: 350)
Name: NF12077_high_15
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 53423456 - 53423115
Alignment:
| Q |
1 |
ctggttagacttttcatatttatacaaaatgtgaataatcaatttaatctcaatgattagttcactttacctttgaaaatttctaaaacagttcttgaaa |
100 |
Q |
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| T |
53423456 |
ctggatagacttttcatatttatacaaaatgtgaataatcaatttaatctcaatgattagttcactttacctttgaaaatttctaaaacagttcttgaaa |
53423357 |
T |
|
| Q |
101 |
ttaaaaattatcaaccatattaaccattttaggtcaattgatttagtttctaaacatgataaaacttaagtgtggtgctttagacactgttttcctactt |
200 |
Q |
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| T |
53423356 |
ttaaaaatgatcaaccatattaaccattttaggtcgattgatttagtttctaaacatgataaaacttaagtgtggtgctttagacactgttttcctactt |
53423257 |
T |
|
| Q |
201 |
tatcaactaacaagatggtaattaaattgtcaaatttatggagactgatgtgataaaagattttattttataaatcattttgaattttttaagtttcaaa |
300 |
Q |
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| T |
53423256 |
tatcaactaacaagatggtaattaaattgtcaaatttatggagactgatgtgataaaagattttattttataaatcattttgaattttttaagtttcaaa |
53423157 |
T |
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| Q |
301 |
agtaaaattgtctaaccaaaacaatatttcacaaattaaattga |
344 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
53423156 |
agtaaaattgtctaaccaaaaca--atttcacaaattaaattga |
53423115 |
T |
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