View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_high_25 (Length: 250)
Name: NF12077_high_25
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40709102 - 40709337
Alignment:
| Q |
1 |
agtaacatttgaattcaaatgccattctatctannnnnnncaacattaggacttaaattctgtatctcaagatttacaacactcacacgtaccaaccact |
100 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40709102 |
agtaacatttgaattcaaatgctattctatctatttttttcaacattaggacttaaattctgtatctcaagatttacaacactcacacgtaccaaccact |
40709201 |
T |
|
| Q |
101 |
tgggaacatgagtgttaagatccagaaagaacnnnnnnngactatctactatgggctatatatagcttatgtgtctagcattgcttaactatgtctagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40709202 |
tgggaacatgagtgttaagatccagaaagaacaaaaaaagactatctactatgggctatatatagcttatgtgtctagcattgcttaactatgtctagtt |
40709301 |
T |
|
| Q |
201 |
tttatttatttattttgtgaaggagtgctttttcat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40709302 |
tttatttatttattttgtgaaggagtgctttttcat |
40709337 |
T |
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