View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_high_30 (Length: 236)
Name: NF12077_high_30
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_30 |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 7683355 - 7683576
Alignment:
| Q |
1 |
tagttggtccatgaattgtgctgtaatatagagtaagaaaaaggtacagaaaagaaacgcacacaactctaatataatttttaaacttacatactttcta |
100 |
Q |
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|||| |||||||||||||| ||||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
7683355 |
tagtcggtccatgaattgtactgtactatatagtaagaaaaaggtacagaaaagaaatgcacacaactctaatataatttttaaacttacatactttcta |
7683454 |
T |
|
| Q |
101 |
ttggtatcatcgagtgagtacgtgaatcagatcataagcaaaaacataatacacgcacgcatatattaccatatattgagaaacattaaattttccattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7683455 |
ttggtatcatcgagtgagtacgtgaatcagatcataagcaaaaacataatacacgcacgcatatattaccatatattgagaaacattaaattttccattg |
7683554 |
T |
|
| Q |
201 |
tcatgaagtttatgacacaatt |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
7683555 |
tcatgaagtttatgacacaatt |
7683576 |
T |
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