View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12077_high_32 (Length: 223)
Name: NF12077_high_32
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_32 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 207
Target Start/End: Complemental strand, 40708886 - 40708680
Alignment:
| Q |
1 |
atgtgtgtgagtgtgtgactcacattgatttcacctaataacaaagtaaatgttcttaaagtgagtgttgaaaagagagtgtctataatactcctcgtta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
40708886 |
atgtgtgtgagtgtgtgactcacattgatttcacctaataacaaagtaaatgttcttaaagtgagtgttgaaaagagagtgtctataatactcctcgcta |
40708787 |
T |
|
| Q |
101 |
aactaacgtaaattttacctaatgaaatagcaataataccacccatttgatactgggttgtgtacaaataatcaagcatgtcattctcttcctcttcaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40708786 |
aactaacgtaaattttacctaatgaaatagcaataataccacccatttgatactgggttgtgtacaaataatcaagcatgtcattctcttcctcttcaga |
40708687 |
T |
|
| Q |
201 |
tatttct |
207 |
Q |
| |
|
||||||| |
|
|
| T |
40708686 |
tatttct |
40708680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University