View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_high_6 (Length: 490)
Name: NF12077_high_6
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 12855590 - 12855381
Alignment:
| Q |
37 |
ttcttcttaagcttagtttctgaaacttatagtgagattttaatgcaattctatgccttagttttaagtttattttttaaacttatagtgagatatatag |
136 |
Q |
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| T |
12855590 |
ttcttcttaagcttagtttctgaagcttatagtgagattttaatgcaattctatgccttagttttaagtttattttttaaacttatagtgagata----g |
12855495 |
T |
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| Q |
137 |
taattgtatctaatattgtaggtttttgaaccatttactaagattttgaatttccaaaacataatatcaagaaaaaagagaatgctaattagtgtattta |
236 |
Q |
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| T |
12855494 |
taattgtatctaatattgtaggtttttgaaccatttactaagattttgaatttccaaaacataatatcaagaaaaaaaagaatgctaattagtgtattta |
12855395 |
T |
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| Q |
237 |
gaacattgattaag |
250 |
Q |
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| T |
12855394 |
gaacattgattaag |
12855381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 324 - 461
Target Start/End: Complemental strand, 12855308 - 12855171
Alignment:
| Q |
324 |
atgtaaaaaatttctttttggtttctttaactaatgatccgtaacactattagtatnnnnnnnncactggtgtgatatca-nnnnnnnnaaagagtgata |
422 |
Q |
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| T |
12855308 |
atgtaaaaaatttctttttggtttctttaactaatgatccgtaacactattagtataaaaaaaa-actggtgtgatatcatttttttttaaagagtgata |
12855210 |
T |
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| Q |
423 |
tcctttttcttggtaattactaattgagaaatatgtgac |
461 |
Q |
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| T |
12855209 |
tcctttttcttggtaattactaattgagaaatatgtgac |
12855171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 2632641 - 2632677
Alignment:
| Q |
57 |
tgaaacttatagtgagattttaatgcaattctatgcct |
94 |
Q |
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| T |
2632641 |
tgaaacttatagtgag-ttttaatgcaattctatgcct |
2632677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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