View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_high_8 (Length: 454)
Name: NF12077_high_8
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 32372179 - 32371746
Alignment:
| Q |
1 |
aaaatagaaaagaggaacatatcagactggacaaagcattgcaaaccagacaaacgaaaaaagagaagaggaccacaaacctgacatgcgaacacaagag |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32372179 |
aaaatagaaaagaggaacacatcagactggacaaagcattgcaaaccagacaaacgaaaaaagagaagaggaccacaaacctgacatgcgaacacaagag |
32372080 |
T |
|
| Q |
101 |
aaggccgaaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtatcacacagagatttaagagaaacacaaagactaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |
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| T |
32372079 |
aaggccgaaaaaacacagtgcaactcgtctgagacgaaagccagagatgacacaaagcaacagtgtcacacagagatgtaagagaaacacaaagactaga |
32371980 |
T |
|
| Q |
201 |
gattagagaagatattaggatacaactcttagaattcaataaactgtgaggcggtactgcgatttgggcttttttagnnnnnnnttcgaactccataatc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
32371979 |
gattagagaagatattaggatacaactcttagaattcaataaactgtgaggcggtactgcgatttgggcttttttagaaaaaaattcgaactccataatc |
32371880 |
T |
|
| Q |
301 |
gtgagcttttctcgcatctgtccagaaaacgattatgttggcgagccaacttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgactt |
400 |
Q |
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||||| |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32371879 |
gtgagtttttctcgcatctgtccagaaaacgaatatgttcgtgagccaacttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgactt |
32371780 |
T |
|
| Q |
401 |
gcgagttttccaaccatgatataaatacaattcc |
434 |
Q |
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|| || ||| ||||||||||||||||||||||| |
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| T |
32371779 |
gcaagctttttaaccatgatataaatacaattcc |
32371746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 328 - 434
Target Start/End: Original strand, 32364989 - 32365095
Alignment:
| Q |
328 |
aacgattatgttggcgagccaacttgtatgggttgctgggctcgtaaacttggccaagtctacaagctgacttgcgagttttccaaccatgatataaata |
427 |
Q |
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|||||||||||| ||||| |||||||||||||| ||||| ||||||||||||||||| ||||| ||||||||||||||||| | |||||||||||||||| |
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| T |
32364989 |
aacgattatgttcgcgagtcaacttgtatgggtagctggactcgtaaacttggccaactctacgagctgacttgcgagtttgctaaccatgatataaata |
32365088 |
T |
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| Q |
428 |
caattcc |
434 |
Q |
| |
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||||||| |
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| T |
32365089 |
caattcc |
32365095 |
T |
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