View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12077_low_1 (Length: 989)
Name: NF12077_low_1
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 134; Significance: 3e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 68 - 265
Target Start/End: Complemental strand, 33340088 - 33339891
Alignment:
| Q |
68 |
gcaacttctatgaggtcattcaagttcagggcgactgttgcttctgctccaagctttcggtcaactgaacgtgcacaaagaagaaaggaggtaaaatttg |
167 |
Q |
| |
|
||||||||| ||| ||| ||||||| |||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
33340088 |
gcaacttctgtgaagtcgttcaagtccagggcaactgttgcttctgctccaagctttcggtcgactgaacgcgcacaaagaagaaaggaggtaaattttg |
33339989 |
T |
|
| Q |
168 |
ttgattaattagctttgtttcaatagggttttcatctcaaattgatcggagcatccccttttgtttgtgtcatagttctattcaaaattagaggaaaa |
265 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| || |||||||||| | |||||||||||| ||||||| |||||| |||||||||||||||||||| |
|
|
| T |
33339988 |
ttgattaagtagctttgtttcaatagggttttcttcccaaattgatcagtgcatccccttttatttgtgttatagttttattcaaaattagaggaaaa |
33339891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 7e-64
Query Start/End: Original strand, 796 - 971
Target Start/End: Original strand, 47096814 - 47096990
Alignment:
| Q |
796 |
ttttggaatggccaagctgctaatcaaagacagaagtagaacaagcacaaatgttagagggacaatgggatatttggcaccagaatggctc-aaaatgca |
894 |
Q |
| |
|
|||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47096814 |
ttttggaatggcaaagctattaatgaatgacagaagtagaacaagcacaaatgttagagggacaatgggatatttggcaccagaatggctcaaaaatgcg |
47096913 |
T |
|
| Q |
895 |
cctatcactgcaaaagtggatatctacagctttggtgttctgttgcttgaaatattattttgcagaaggcacattga |
971 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||| |||||||||||| |
|
|
| T |
47096914 |
cctatcactgcaaaagtggatatctacagccttggtgtcatgttgcttgaaatcttattttgcaaaaggcacattga |
47096990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 9e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 435 - 600
Target Start/End: Original strand, 28182383 - 28182550
Alignment:
| Q |
435 |
taatcattgtttctatatattaagtgtagttgcagtcagcctgtcaccactcacc-aatcatctttctcgacagtgatgtcttaataattcttaaccttt |
533 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||| |||||||| || ||||||||||||| ||| ||||||||||||| ||| ||| |
|
|
| T |
28182383 |
taatcatggtttctatatattaagtgtagttgccgtcagcctgtcatcactcaccaaagcatctttctcgacgatgacctcttaataattctcaactttt |
28182482 |
T |
|
| Q |
534 |
tttaaaatgatttgcatattcattatgcattttgg-tatacatattgtatcagactttttcctttgaa |
600 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||| ||||| ||||||||||| ||||| ||||||| |
|
|
| T |
28182483 |
tttaaaatgatttacatattcattatacattttggccatacacattgtatcagaattttttctttgaa |
28182550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 8e-33; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 688 - 791
Target Start/End: Original strand, 37464149 - 37464255
Alignment:
| Q |
688 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatac---gaagcatatcactttttgcaagtaaactatagctcaaa |
784 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
37464149 |
ctagcaggtacttaattctgtaattggaactcttcattccaagtttaacaccctcatactttcttgcatatcactttttgcaagtaaactatagctcaaa |
37464248 |
T |
|
| Q |
785 |
attaaag |
791 |
Q |
| |
|
||||||| |
|
|
| T |
37464249 |
attaaag |
37464255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 688 - 800
Target Start/End: Original strand, 49021264 - 49021379
Alignment:
| Q |
688 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatacgaa---gcatatcactttttgcaagtaaactatagctcaaa |
784 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
49021264 |
ctagcatgtacttaattctgtaattgtatctcttcattccatgtttagcaccatcatactttcttgcatatcactttttgcatgtaaactatagctcaaa |
49021363 |
T |
|
| Q |
785 |
attaaagcatgttttg |
800 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
49021364 |
attaaagcatgttttg |
49021379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 688 - 794
Target Start/End: Complemental strand, 37589908 - 37589799
Alignment:
| Q |
688 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatac---gaagcatatcactttttgcaagtaaactatagctcaaa |
784 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||| ||||||||| || |
|
|
| T |
37589908 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttgacaccatcatactttcttgcatatcactttttgcatgtaacctatagctccaa |
37589809 |
T |
|
| Q |
785 |
attaaagcat |
794 |
Q |
| |
|
|||||||||| |
|
|
| T |
37589808 |
attaaagcat |
37589799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 5e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 688 - 800
Target Start/End: Complemental strand, 37426977 - 37426862
Alignment:
| Q |
688 |
ctagcaggtacttaattctgtaattgtaactcttcattccaagtttaacaccatcatacgaa---gcatatcactttttgcaagtaaactatagctcaaa |
784 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||||||||| ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37426977 |
ctagcatgtacttaattctgtaattgtatctcttcattccatgtttagcaccatcatactttcttgcatatcactttttgcatgtaaactatagctcaaa |
37426878 |
T |
|
| Q |
785 |
attaaagcatgttttg |
800 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
37426877 |
attaaagcatgttttg |
37426862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 383 - 437
Target Start/End: Original strand, 1726161 - 1726215
Alignment:
| Q |
383 |
agtgtcatgcaatgattttgaggtccttgatcctctattgatgctgcagctttaa |
437 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1726161 |
agtgtcatgcaatgactttgaggtccttgatcctctgttgatgctgcagctttaa |
1726215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 18328169 - 18328139
Alignment:
| Q |
26 |
aactttaaatatatcacttatttattttagg |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
18328169 |
aactttaaatatatcacttatttattttagg |
18328139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University