View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_low_12 (Length: 400)
Name: NF12077_low_12
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 212 - 382
Target Start/End: Original strand, 48667209 - 48667379
Alignment:
| Q |
212 |
atcatgacgatggtgaatttgctgaatgcgttgacagtgagtcggatattgactcgtgaccacttatctctcgccaatgaaggcataccttttggatccg |
311 |
Q |
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| T |
48667209 |
atcatgacgatggtgaatttgctgaatgcgttgacagtgagtcggatattgactcgtgatcacttatctctcgccaatgaaggcataccttttggatccg |
48667308 |
T |
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| Q |
312 |
taacatggatcgcttatgtcggcatctgttgttttctcgtatgctttgctggtatcatgtccggtctcact |
382 |
Q |
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| T |
48667309 |
taacatggatcgcttatgtcggcatctgttgttttctcgtatgctttgctggtatcatgtccggtctcact |
48667379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 48667017 - 48667134
Alignment:
| Q |
11 |
aagaagtaacgcgggatgcgattgtttgtttggtagttgcggttcggttatgataatcaatacatgacgtggattgatcatcaccgtggaacccatccat |
110 |
Q |
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| T |
48667017 |
aagaagtaacgcgggatgcgattgtttgtttggtagttgcggttcggttatgataatcaatacatgacgtggattgatcatcaccgtggaacccatccat |
48667116 |
T |
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| Q |
111 |
ttccatagcacgtgacct |
128 |
Q |
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| T |
48667117 |
taccatagcacgtgacct |
48667134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 215 - 327
Target Start/End: Original strand, 2792470 - 2792582
Alignment:
| Q |
215 |
atgacgatggtgaatttgctgaatgcgttgacagtgagtcggatattgactcgtgaccacttatctctcgccaatgaaggcataccttttggatccgtaa |
314 |
Q |
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| T |
2792470 |
atgacgatgatgaacttgataaatgcgttggcggtgagtcggatattgactcgtgatccatccgttctcgcccacgaaagcataccttttgggtcggcaa |
2792569 |
T |
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| Q |
315 |
catggatcgctta |
327 |
Q |
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| T |
2792570 |
catggatcgctta |
2792582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 381
Target Start/End: Original strand, 16387793 - 16387895
Alignment:
| Q |
279 |
ctctcgccaatgaaggcataccttttggatccgtaacatggatcgcttatgtcggcatctgttgttttctcgtatgctttgctggtatcatgtccggtct |
378 |
Q |
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|||||||||| ||||||||||||||||| || | ||||||||| ||||| | ||| || || |||||||| || |||||| || ||||||||||||| |
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| T |
16387793 |
ctctcgccaacgaaggcataccttttggttctgcaacatggattgcttacgccggaatatgctgttttcttgttctctttgccggagtcatgtccggtct |
16387892 |
T |
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| Q |
379 |
cac |
381 |
Q |
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||| |
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| T |
16387893 |
cac |
16387895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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