View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_low_14 (Length: 377)
Name: NF12077_low_14
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 85 - 362
Target Start/End: Complemental strand, 12418920 - 12418643
Alignment:
| Q |
85 |
tcacatcagttcaaagtcataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattacaagtatcataatggag |
184 |
Q |
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| T |
12418920 |
tcacatcagttcaaagaaataagccttggcgttactgttcaatttttcaccaataccaactaaggttccaacacataccattacaagtatcataatggag |
12418821 |
T |
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| Q |
185 |
aatcatagttttttatcgagtgaattttgggaacctttggattttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcac |
284 |
Q |
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| T |
12418820 |
aatcatagttttttatcgagtgaattttgggaacctttggattttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcac |
12418721 |
T |
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| Q |
285 |
acggggagtttatagaattttgaaggaagcaaaagtattaaaaaagggtcttgaaccttgatagtgaaggttaaaact |
362 |
Q |
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| T |
12418720 |
acggggagtttatagaattttgaaggaagcaaaagtattaaaaaagggtcttgaatcttgatagtgaaggttaaaact |
12418643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 12419363 - 12419278
Alignment:
| Q |
1 |
aattgtggaagaaaacttgggccaaagaatttgcttggtgactaagacaaaagcacacnnnnnnnntctttaatgtcactcacatc |
86 |
Q |
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| T |
12419363 |
aattgtggaagaaaacttgggccaaagaatttgcttggtgactaagacaaaagcacacaaaaaaaatctttaatgtcactcacatc |
12419278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 311
Target Start/End: Original strand, 12654794 - 12654848
Alignment:
| Q |
257 |
tgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaagga |
311 |
Q |
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| T |
12654794 |
tgaacaagtttgttattagcttaggtacatggagagtttatagaacattgaagga |
12654848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 227 - 336
Target Start/End: Complemental strand, 15329118 - 15329011
Alignment:
| Q |
227 |
tttctgcataattatgaagaaatatttgtgtgaacaagttcgttattagcttaggcacacggggagtttatagaattttgaaggaagcaaaagtattaaa |
326 |
Q |
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| T |
15329118 |
tttctgcataattatgtagaaaaat--gtgtgatcaagtttgttattagcttagtcacatggagagtttatagaaaggggaaggaagcaaaagtattaag |
15329021 |
T |
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| Q |
327 |
aaagggtctt |
336 |
Q |
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|||| ||||| |
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| T |
15329020 |
aaagagtctt |
15329011 |
T |
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