View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12077_low_16 (Length: 340)

Name: NF12077_low_16
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12077_low_16
NF12077_low_16
[»] chr5 (3 HSPs)
chr5 (22-340)||(15160566-15160883)
chr5 (18-61)||(14416877-14416920)
chr5 (97-254)||(15315606-15315762)
[»] chr8 (1 HSPs)
chr8 (71-315)||(26465267-26465505)
[»] chr6 (4 HSPs)
chr6 (71-326)||(14369689-14369937)
chr6 (18-60)||(7913263-7913305)
chr6 (19-61)||(7601103-7601145)
chr6 (28-61)||(16722036-16722069)
[»] chr7 (5 HSPs)
chr7 (18-62)||(25035270-25035314)
chr7 (18-61)||(28312870-28312913)
chr7 (22-61)||(17710803-17710842)
chr7 (18-61)||(24731616-24731659)
chr7 (29-61)||(3365282-3365314)
[»] scaffold0726 (1 HSPs)
scaffold0726 (18-61)||(350-393)
[»] chr3 (3 HSPs)
chr3 (18-61)||(24993545-24993588)
chr3 (19-61)||(23363046-23363088)
chr3 (18-54)||(36084690-36084726)
[»] chr2 (3 HSPs)
chr2 (285-326)||(24846712-24846753)
chr2 (17-61)||(18814862-18814906)
chr2 (18-62)||(24846762-24846806)
[»] chr1 (1 HSPs)
chr1 (17-56)||(20427563-20427602)
[»] chr4 (3 HSPs)
chr4 (19-61)||(2549498-2549540)
chr4 (19-61)||(28461378-28461420)
chr4 (18-62)||(8353520-8353564)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 22 - 340
Target Start/End: Original strand, 15160566 - 15160883
Alignment:
Q  22 tgtagcaaattttgttgcataaatgttactgaatagtgaaatagaacagaagctaactagtgttctaaataaacctgaaaatagcaggacgacagaggaa 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  15160566 tgtagcaaattttgttacataaatgttactgaatagtgaaatagaacagaagctaactagtgttctaaataaacctgaaaataccaggacgacagaggaa 15160665  T
Q  122 ggctactttgcatgcccatgcatttgaaaacaggatatgaaaaaatcatcacaggtagatttgactccaaaatgatacaccaataagcgaataatacata 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||| |||||||||||||||||    
T  15160666 ggctactttgcatgcccatgcatttgaaaacaggatatgaaaaaatcatcagaggtagatttgactcc-aagtgatacaccagtaagcgaataatacata 15160764  T
Q  222 tctcctcagattcagggctgttagtttttgcctacatgaattgaaagtgagaattagcaatcaaatcttacatactgatcatactatactcatatagtat 321  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15160765 tatcctcagattcagggctgttagtttttgcctacatgaattgaaaatgagaattagcaatcaaatcttgcatactgatcatactatactcatatagtat 15160864  T
Q  322 gatgaaagtaactcataat 340  Q
    |||||||||||||||||||    
T  15160865 gatgaaagtaactcataat 15160883  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 14416877 - 14416920
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14416877 caattgtagcaaattttgttgcataaatgttactgaatagtgaa 14416920  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 97 - 254
Target Start/End: Complemental strand, 15315762 - 15315606
Alignment:
Q  97 tgaaaatagcaggacgacagaggaaggctactttgcatgcccatgcatttgaaaacaggatatgaaaaaatcatcacaggtagatttgactccaaaatga 196  Q
    ||||| || |||||||  || ||||| ||||| ||||| |||||| || |||| || ||||||||||||||||| ||||||||| ||||| || ||||||    
T  15315762 tgaaagtaccaggacggtaggggaagactactctgcattcccatgtatctgaagacgggatatgaaaaaatcataacaggtaga-ttgacaccgaaatga 15315664  T
Q  197 tacaccaataagcgaataatacatatctcctcagattcagggctgttagtttttgcct 254  Q
    || | ||| | ||||| ||||||| | |||| || ||||||||| ||| |||| ||||    
T  15315663 tatagcaacaggcgaacaatacatttatcctgagcttcagggctattatttttcgcct 15315606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 71 - 315
Target Start/End: Original strand, 26465267 - 26465505
Alignment:
Q  71 aagctaactagtgttctaaataaacctgaaaatagcaggacgacagaggaaggctactttgcatgcccatgcatttgaaaacaggatatgaaaaaatcat 170  Q
    |||| ||||||||||||||| |||||||||| || ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26465267 aagcgaactagtgttctaaagaaacctgaaagtaccaggacggcagaggaaggctactttgcatgcccatgtatttgaaaacaggatatgaaaaaatcat 26465366  T
Q  171 cacaggtagatttgactccaaaatgatacaccaataagcgaataatacatatctcctcagattcagggctgttagtttttgcctacatgaattgaaagtg 270  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||     ||||||||    
T  26465367 cacaggtaga-ttgactccaaaatgatacaccaataagcgaataatacatctctcctcagattcacggctgttagtttttgcctaca-----tgaaagtg 26465460  T
Q  271 agaattagcaatcaaatcttacatactgatcatactatactcata 315  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||    
T  26465461 agaattagcaatctaatcttacatattgatcatactatactcata 26465505  T

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Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 71 - 326
Target Start/End: Original strand, 14369689 - 14369937
Alignment:
Q  71 aagctaactagtgttctaaataaacctgaaaatagcaggacgacagaggaaggctactttgcatgcccatgcatttgaaaacaggatatgaaaaaatcat 170  Q
    |||| ||||||| ||||||| |||||||||| || ||||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  14369689 aagcgaactagt-ttctaaagaaacctgaaagtaccaggacggcagaggaaggctactatgcatgcccatgtatttgaaaacaggatatgaaaaaatcat 14369787  T
Q  171 cacaggtagatttgactccaaaatgatacaccaataagcgaataatacatatctcctcagattcagggctgttagtttttgcctacatgaattgaaagtg 270  Q
    | |||||||| ||||||||||||||  ||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||     ||||||||    
T  14369788 cgcaggtaga-ttgactccaaaatgtaacaccaataagcgaataatacatctctccttagattcagggctgttaatttttgtctaca-----tgaaagtg 14369881  T
Q  271 agaattagcaatcaaatcttacatactgatcatactatactcatatagtatgatga 326  Q
    |||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||    
T  14369882 agaattagcaataaaatcttacataatgatcatactatactcatatagtataatga 14369937  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Complemental strand, 7913305 - 7913263
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtga 60  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  7913305 caattgtagcaaattttgttgcataaatgttactgaatagtga 7913263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 7601145 - 7601103
Alignment:
Q  19 aattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    ||||| || ||||| ||||||||||||||||||||||||||||    
T  7601145 aattgcagaaaattctgttgcataaatgttactgaatagtgaa 7601103  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Complemental strand, 16722069 - 16722036
Alignment:
Q  28 aaattttgttgcataaatgttactgaatagtgaa 61  Q
    ||||| ||||||||||||||||||||||||||||    
T  16722069 aaattatgttgcataaatgttactgaatagtgaa 16722036  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 25035270 - 25035314
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtgaaa 62  Q
    ||||||||||||||| |||||||||||||||||||||||||||||    
T  25035270 caattgtagcaaattatgttgcataaatgttactgaatagtgaaa 25035314  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28312870 - 28312913
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    |||||||||||||||||||||||||||| ||||||||| |||||    
T  28312870 caattgtagcaaattttgttgcataaatattactgaatggtgaa 28312913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 61
Target Start/End: Original strand, 17710803 - 17710842
Alignment:
Q  22 tgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    ||||||||||||  ||||||||||||||||||||||||||    
T  17710803 tgtagcaaatttcattgcataaatgttactgaatagtgaa 17710842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 24731659 - 24731616
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    |||||||| |||||||||||||||||||||| |||||| |||||    
T  24731659 caattgtatcaaattttgttgcataaatgtttctgaatggtgaa 24731616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 3365282 - 3365314
Alignment:
Q  29 aattttgttgcataaatgttactgaatagtgaa 61  Q
    |||| ||||||||||||||||||||||||||||    
T  3365282 aattctgttgcataaatgttactgaatagtgaa 3365314  T

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Target: scaffold0726 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0726
Description:

Target: scaffold0726; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 393 - 350
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  393 caattgtagcaaattttgttgcataaatgttacttaatagtgaa 350  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 24993545 - 24993588
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    |||||||||||||||||||||||||||||||||| |||||||||    
T  24993545 caattgtagcaaattttgttgcataaatgttacttaatagtgaa 24993588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Complemental strand, 23363088 - 23363046
Alignment:
Q  19 aattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    ||||| || ||||| ||||||||||||||||||||||||||||    
T  23363088 aattgcagaaaattctgttgcataaatgttactgaatagtgaa 23363046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 36084690 - 36084726
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaa 54  Q
    |||||||||||||  ||||||||||||||||||||||    
T  36084690 caattgtagcaaaaattgttgcataaatgttactgaa 36084726  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 285 - 326
Target Start/End: Complemental strand, 24846753 - 24846712
Alignment:
Q  285 aatcttacatactgatcatactatactcatatagtatgatga 326  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  24846753 aatcttacatactgatcatactatactcatatagtttgatga 24846712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 18814862 - 18814906
Alignment:
Q  17 acaattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||    
T  18814862 acaattgcagcaaattttgttgcataaatgttactcaatagtgaa 18814906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 24846806 - 24846762
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtgaaa 62  Q
    |||||| |||||||| |||||||| ||||||||||||||||||||    
T  24846806 caattgcagcaaattctgttgcatgaatgttactgaatagtgaaa 24846762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 20427602 - 20427563
Alignment:
Q  17 acaattgtagcaaattttgttgcataaatgttactgaata 56  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  20427602 acaactgtagcaaattttgttgcataaatgttactgaata 20427563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 2549498 - 2549540
Alignment:
Q  19 aattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||    
T  2549498 aattgaagcgaattatgttgcataaatgttactgaatagtgaa 2549540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 28461378 - 28461420
Alignment:
Q  19 aattgtagcaaattttgttgcataaatgttactgaatagtgaa 61  Q
    ||||| || ||||| ||||||||||||||||||||||||||||    
T  28461378 aattgcagaaaattctgttgcataaatgttactgaatagtgaa 28461420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 8353520 - 8353564
Alignment:
Q  18 caattgtagcaaattttgttgcataaatgttactgaatagtgaaa 62  Q
    |||||| |||||||| |||||| | ||||||||||||||||||||    
T  8353520 caattgcagcaaattctgttgcgtgaatgttactgaatagtgaaa 8353564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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