View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12077_low_17 (Length: 339)

Name: NF12077_low_17
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12077_low_17
NF12077_low_17
[»] chr1 (4 HSPs)
chr1 (19-333)||(51044467-51044781)
chr1 (250-333)||(37962864-37962947)
chr1 (266-326)||(16138908-16138968)
chr1 (266-326)||(16127398-16127458)
[»] chr3 (2 HSPs)
chr3 (201-333)||(34626627-34626759)
chr3 (19-137)||(34626399-34626517)
[»] chr4 (2 HSPs)
chr4 (201-332)||(43560475-43560606)
chr4 (28-136)||(43560173-43560281)
[»] chr8 (7 HSPs)
chr8 (66-132)||(5948222-5948288)
chr8 (66-132)||(5983835-5983901)
chr8 (50-111)||(5886857-5886918)
chr8 (52-136)||(5920637-5920721)
chr8 (279-332)||(41351226-41351279)
chr8 (68-132)||(5959319-5959383)
chr8 (274-326)||(5960389-5960441)
[»] chr7 (3 HSPs)
chr7 (267-329)||(45676073-45676135)
chr7 (28-137)||(45675760-45675869)
chr7 (71-137)||(28944894-28944960)
[»] chr2 (4 HSPs)
chr2 (49-136)||(42788743-42788830)
chr2 (66-128)||(41830786-41830848)
chr2 (71-120)||(13344888-13344937)
chr2 (266-330)||(13342983-13343047)
[»] chr5 (2 HSPs)
chr5 (279-332)||(2590843-2590896)
chr5 (19-50)||(39674811-39674842)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 333
Target Start/End: Complemental strand, 51044781 - 51044467
Alignment:
Q  19 atgtgtagctggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51044781 atgtgtagctggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgat 51044682  T
Q  119 gcaatttgagcccacctgaggcatcatttgaaattaattaataaacacnnnnnnngaagcattattaattaatatatataacatgttacctatttccaag 218  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||||||||||||||||||||    
T  51044681 gcaatttgagcccacctgaggcatcatttgaaattaattaataatcactttttttgaagcattattaattaatatatataacatgttacctatttccaag 51044582  T
Q  219 tgcttcatgaagattgatgataagatcttcctcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctc 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51044581 tgcttcatgaagattgatgataagatcttcctcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctc 51044482  T
Q  319 tttccacacctttgc 333  Q
    |||||||||||||||    
T  51044481 tttccacacctttgc 51044467  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 333
Target Start/End: Complemental strand, 37962947 - 37962864
Alignment:
Q  250 tcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccacacctttgc 333  Q
    ||||||| ||||||   |||||| ||||||||||||||||| || ||||||||||| || || || ||||| ||||||||||||    
T  37962947 tcttgttgtgagaatgctcctcttttcaaatcaggcctcaagtaatttatccatcttaacctgcaactcttcccacacctttgc 37962864  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 16138908 - 16138968
Alignment:
Q  266 ttcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccaca 326  Q
    |||||||||| | ||||||  | |||||||| ||||||||||||||||| |||||||||||    
T  16138908 ttcctctcttaatatcaggttttaaatagttaatccatctcaatctacaactctttccaca 16138968  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 16127398 - 16127458
Alignment:
Q  266 ttcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccaca 326  Q
    |||||||||| | |||||  || ||||| || ||||||||||||||||| |||||||||||    
T  16127398 ttcctctcttaatatcagttcttaaataattaatccatctcaatctacaactctttccaca 16127458  T

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Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 201 - 333
Target Start/End: Original strand, 34626627 - 34626759
Alignment:
Q  201 atgttacctatttccaagtgcttcatgaagattgatgataagatcttcctcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatc 300  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||    
T  34626627 atgttacctatttccaagtgcttcatgaagattgataataagatcttcctcttgttttgagaacattcctctcttcaaatcaggtctcagatagttgatc 34626726  T
Q  301 catctcaatctacagctctttccacacctttgc 333  Q
    |||||||||||||| ||||||||||| ||||||    
T  34626727 catctcaatctacaactctttccacatctttgc 34626759  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 34626399 - 34626517
Alignment:
Q  19 atgtgtagctggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgat 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||| |    
T  34626399 atgtgtagctggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagtttttaatctcattatccgttctacctggtaattgtgct 34626498  T
Q  119 gcaatttgagcccacctga 137  Q
    |||||||||||||||||||    
T  34626499 gcaatttgagcccacctga 34626517  T

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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 201 - 332
Target Start/End: Original strand, 43560475 - 43560606
Alignment:
Q  201 atgttacctatttccaagtgcttcatgaagattgatgataagatcttcctcttgttttgagaacattcctctcttcaaatcaggcctcaaatagtttatc 300  Q
    ||||||||||||||||||  ||||||||||| |||| |||||||| || ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  43560475 atgttacctatttccaaggacttcatgaagactgattataagatcctcttcttgttgtgagaacattcctctctttaaatcaggcctcaaatagtttatc 43560574  T
Q  301 catctcaatctacagctctttccacacctttg 332  Q
    |||||||||||||| ||||||||||| |||||    
T  43560575 catctcaatctacaactctttccacatctttg 43560606  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 43560173 - 43560281
Alignment:
Q  28 tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttga 127  Q
    ||||||||||||||| || |  || |||||||| ||||  |||||||| |||||||| || |||||||||||||||||||||||||||| ||| ||||||    
T  43560173 tggatcaatcccttgctttagaagcttcttctttaaacacgaattccagaagtttttaatttcattatctgttctccctggtaattgtgctgctatttga 43560272  T
Q  128 gcccacctg 136  Q
    |||||||||    
T  43560273 gcccacctg 43560281  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 5948222 - 5948288
Alignment:
Q  66 ttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagccca 132  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| ||   |||||||||||||||    
T  5948222 ttgaattccaaaagttttttatctcattatctgttcttccaggtaagtgctttgcaatttgagccca 5948288  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 132
Target Start/End: Original strand, 5983835 - 5983901
Alignment:
Q  66 ttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagccca 132  Q
    ||||||||||||||||||| | ||||||||||||||| || ||||| |||  |||||| ||||||||    
T  5983835 ttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgttttgcaatctgagccca 5983901  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 111
Target Start/End: Original strand, 5886857 - 5886918
Alignment:
Q  50 agtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaa 111  Q
    ||||| |||||||  |||||||||||||||||||| | ||||||||| ||||| ||||||||    
T  5886857 agttttttcttcatgcttgaattccaaaagtttttcacctcattatccgttcttcctggtaa 5886918  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 136
Target Start/End: Original strand, 5920637 - 5920721
Alignment:
Q  52 tttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagcccacctg 136  Q
    |||||||||||   ||||||||||||||||||| | ||||||||||||||| || ||||| ||    ||||| ||||||||||||    
T  5920637 tttcttcttcatggttgaattccaaaagtttttcacctcattatctgttcttccaggtaagtgcttcgcaatctgagcccacctg 5920721  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 41351226 - 41351279
Alignment:
Q  279 atcaggcctcaaatagtttatccatctcaatctacagctctttccacacctttg 332  Q
    |||||| |||||||| ||||||||||| |||| ||| ||||| |||||||||||    
T  41351226 atcaggtctcaaataatttatccatcttaatcgacaactcttaccacacctttg 41351279  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 5959319 - 5959383
Alignment:
Q  68 gaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagccca 132  Q
    ||||||||||||||||| | ||||||||||||||| || | ||| |||  |||||| ||||||||    
T  5959319 gaattccaaaagtttttcacctcattatctgttcttccagttaagtgttttgcaatctgagccca 5959383  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 326
Target Start/End: Original strand, 5960389 - 5960441
Alignment:
Q  274 ttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccaca 326  Q
    ||||||||||| || | ||| ||||||||||| |||||||| |||||||||||    
T  5960389 ttcaaatcaggtcttagataatttatccatcttaatctacaactctttccaca 5960441  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 267 - 329
Target Start/End: Original strand, 45676073 - 45676135
Alignment:
Q  267 tcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccacacct 329  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||||| ||||| ||||||||    
T  45676073 tcctctcttcaaatcaggccttagataatttatccatctcaatctacaactcttcccacacct 45676135  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 137
Target Start/End: Original strand, 45675760 - 45675869
Alignment:
Q  28 tggatcaatcccttgtttcattagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttga 127  Q
    ||||||||| |||| || | |||| ||||| |||| |||||||||||| |  |||||||||||||| |||||||| || ||||| || | |||||| ||     
T  45675760 tggatcaattcctttttgctttagcttctttttcagacttgaattccatagattttttatctcattgtctgttcttccaggtaactgagctgcaatctgc 45675859  T
Q  128 gcccacctga 137  Q
    | ||||||||    
T  45675860 gaccacctga 45675869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 28944894 - 28944960
Alignment:
Q  71 ttccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagcccacctga 137  Q
    ||||||||||| ||||||||||| |||||||| || ||||| || ||||||||   |||||||||||    
T  28944894 ttccaaaagttctttatctcattgtctgttcttccgggtaactgggatgcaatagcagcccacctga 28944960  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 42788743 - 42788830
Alignment:
Q  49 tagtttcttcttcaaacttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgagcccacctg 136  Q
    |||||||||||| |  ||||||||||||||||| || | ||||||||||||||| |||||||| ||   ||| || ||||||||||||    
T  42788743 tagtttcttctttatgcttgaattccaaaagttcttcacctcattatctgttcttcctggtaaatgctttgctatctgagcccacctg 42788830  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 128
Target Start/End: Original strand, 41830786 - 41830848
Alignment:
Q  66 ttgaattccaaaagttttttatctcattatctgttctccctggtaattgtgatgcaatttgag 128  Q
    |||||||||||||||||||||| ||||| || ||||| || |||||| ||| ||| |||||||    
T  41830786 ttgaattccaaaagttttttatttcattgtcggttcttcccggtaatcgtgctgctatttgag 41830848  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 13344937 - 13344888
Alignment:
Q  71 ttccaaaagttttttatctcattatctgttctccctggtaattgtgatgc 120  Q
    |||||| |||| |||||||||||||||||||  |||||||| ||||||||    
T  13344937 ttccaatagttctttatctcattatctgttcgtcctggtaaatgtgatgc 13344888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 13343047 - 13342983
Alignment:
Q  266 ttcctctcttcaaatcaggcctcaaatagtttatccatctcaatctacagctctttccacacctt 330  Q
    |||||||||||| ||| |  ||||||||||| |||||||| | |||||| ||||| |||||||||    
T  13343047 ttcctctcttcacatctgctctcaaatagttgatccatcttagtctacaactcttcccacacctt 13342983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 332
Target Start/End: Complemental strand, 2590896 - 2590843
Alignment:
Q  279 atcaggcctcaaatagtttatccatctcaatctacagctctttccacacctttg 332  Q
    ||||||||| ||||| |||||||||||||| ||||| ||||| |||||||||||    
T  2590896 atcaggccttaaataatttatccatctcaacctacaactcttaccacacctttg 2590843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 39674811 - 39674842
Alignment:
Q  19 atgtgtagctggatcaatcccttgtttcatta 50  Q
    ||||||||||||||||||||||||||||||||    
T  39674811 atgtgtagctggatcaatcccttgtttcatta 39674842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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