View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12077_low_18 (Length: 336)
Name: NF12077_low_18
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_18 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 5139640 - 5139325
Alignment:
| Q |
1 |
aattggacaagaaagtgccaagaagacaattggttttattgaggtatcataatataagagtttattgatatacaccgtcggtgtaaaagagttacacatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5139640 |
aattagacaagaaagtgccaagaagacaattggttttattgaggtatcataatataagagtttattgatatacaccgtcggtgtaaaagagttacacatg |
5139541 |
T |
|
| Q |
101 |
acttcatatatatattgatgaggcaacacattgatccatgtgtaaaagttgtgtacactgacattgtatataaattaaactcataatataatagaattta |
200 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5139540 |
actt----gatatattgatgaggcaacacattgatccatgtgtaaaagttgtgtacactgacattgtatataaattaaactcataatataatagaattta |
5139445 |
T |
|
| Q |
201 |
attagtatacactgtttgtgtagaatactttcacacatacatataatgaggtgatgccgcatcatttaatgtggttgaaaactgctgagttgacatattc |
300 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5139444 |
attggtatacactgtttgtgtagaatactttcacacatacatataatgaggtgatgccgcatcatttaatgtggttgaaaactgatgagttgacatattc |
5139345 |
T |
|
| Q |
301 |
cttaatttacatgatatcat |
320 |
Q |
| |
|
||||||| |||||||||||| |
|
|
| T |
5139344 |
cttaattgacatgatatcat |
5139325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 26490281 - 26490244
Alignment:
| Q |
139 |
tgtgtaaaagttgtgtacactgacattgtatataaatt |
176 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
26490281 |
tgtgtaaaacttatgtacactgacattgtatataaatt |
26490244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 34423567 - 34423608
Alignment:
| Q |
141 |
tgtaaaagttgtgtacactgacattgtatataaattaaactc |
182 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
34423567 |
tgtaaaacttgtgtacactgaaattgtatataaattaaactc |
34423608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Original strand, 1018605 - 1018649
Alignment:
| Q |
137 |
catgtgtaaaagttgtgtacactgacattgtatataaattaaact |
181 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||||||||| |
|
|
| T |
1018605 |
catgtgtaaaacatttgtacactgacagtgtatataaattaaact |
1018649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University