View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12077_low_19 (Length: 318)
Name: NF12077_low_19
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 285
Target Start/End: Complemental strand, 4554311 - 4554035
Alignment:
| Q |
19 |
aaactgtaatgcaaagcaccaagagcatgaatattactttggatcccatggctaaagaataatatagtataggtattgattattttgacacaaaatggaa |
118 |
Q |
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| T |
4554311 |
aaactgtaatgcaaagcaccaagagcatgaatattactttggatcccatggctaaagaataatatagtataggtattgattattttgacacaaaatggaa |
4554212 |
T |
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| Q |
119 |
gacagagatatttctatatata----cagatatacatg------acattattggtaacatgaactatatatgtacattgcttaactataagttagctagc |
208 |
Q |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4554211 |
gacagagatatttctatatatatatacagatatacatgtacatgacattattggtaacatgaactatatatgtacattgcttaactataagttagctagc |
4554112 |
T |
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| Q |
209 |
gatgtctgcatgagttaccgtctatatatttgtcattcatcttctgtttaattcacgattttctttcatcgttgaaa |
285 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4554111 |
gatgtctgcatgagctaccgtctatatatttgtcattcatcttctgtttaattcacgattttctttcatcgttgaaa |
4554035 |
T |
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