View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12077_low_21 (Length: 291)
Name: NF12077_low_21
Description: NF12077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12077_low_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 35183861 - 35184133
Alignment:
| Q |
1 |
caacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35183861 |
caacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacc |
35183960 |
T |
|
| Q |
101 |
cttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgcta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35183961 |
cttagttgttagatgagcatgaagatgatcaacaaaagtgctgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgcta |
35184060 |
T |
|
| Q |
201 |
ttggaatcactggaagaacctatatctccctgacccaaatggatcaaatcggaagatgtcaaacgactctgtg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35184061 |
ttggaatcactggaagaacctatatctccctgacccaaatggatcaaatcggaagatgtcaaacgactctgtg |
35184133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 35105912 - 35106104
Alignment:
| Q |
1 |
caacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacc |
100 |
Q |
| |
|
|||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| ||||||||||| || |||||||| |
|
|
| T |
35105912 |
caacaatagaaacccgagaattttgaattgcttgaagaagttgcggcgaaagggattctcctttctcaagcctttgatcatccttgaaggcaaaaatacc |
35106011 |
T |
|
| Q |
101 |
cttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttg |
193 |
Q |
| |
|
||| || |||||||||||||||||||||| |||||||||||||| ||||| | ||| | ||||||||||||||| || |||||||||||||| |
|
|
| T |
35106012 |
ctttctttttagatgagcataaagatgatcgacaaaagtgttgcgcgtgtctggacctctgaaactgataaacacgtcgtatctatagctttg |
35106104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 35177863 - 35178082
Alignment:
| Q |
1 |
caacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacc |
100 |
Q |
| |
|
|||| ||||| ||||| ||| || |||||||||| |||||||| |||||||| |||||||||| || || ||||| ||||||||||| || |||||||| |
|
|
| T |
35177863 |
caacgatagatatccgtgaatttgcaattgcttgtcgaagttgcagcgaaaggcattctcctttctcgagccttttatcatccttgaacgcaaaaatacc |
35177962 |
T |
|
| Q |
101 |
cttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgcta |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||| | ||| | ||||||||||||||| || ||| ||||||| || | | | |
|
|
| T |
35177963 |
ttttcttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtctggacctctgaaactgataaacacgtcgtatttatagctatgcactcca |
35178062 |
T |
|
| Q |
201 |
ttggaatcactggaagaacc |
220 |
Q |
| |
|
|||||||| |||||||||| |
|
|
| T |
35178063 |
ctggaatcaatggaagaacc |
35178082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 35169572 - 35169760
Alignment:
| Q |
1 |
caacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacc |
100 |
Q |
| |
|
|||||||||||||||| ||| || |||||||||| || |||||| |||| | |||||||||| || || ||||| ||||||||||| ||||||| ||| |
|
|
| T |
35169572 |
caacaatagaaatccgtgaatttgtaattgcttgtcgatgttgcgttgaaaagcattctcctttctctagccttttatcatccttgaaggcgaaaacacc |
35169671 |
T |
|
| Q |
101 |
cttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagc |
189 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| ||| |||||| |
|
|
| T |
35169672 |
ctttctagttagatgagcataaagatgatcaacaaaagtgttacgggtgtcagcgcctctgaaactgataaacacatcgtatttatagc |
35169760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 35054999 - 35055173
Alignment:
| Q |
1 |
caacaatagaaatccgagaactttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacc |
100 |
Q |
| |
|
|||||||| |||| || ||| || |||||||||||||||| ||||| |||| |||||||||| ||||| ||||||||||||||||| || |||||||| |
|
|
| T |
35054999 |
caacaataaaaattcgcgaatttcgaattgcttgtagaagctgcggtgaaataaattctcctttctcaagacttttgtcatccttgaaggcaaaaatacc |
35055098 |
T |
|
| Q |
101 |
cttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacac |
175 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| | ||||| ||||||| ||| | |||||||| ||||| |
|
|
| T |
35055099 |
ttttcttgttagatgagcataaagatgatcaacaaaactattgcgagtgtcaggacctctaaaactgatgaacac |
35055173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 111 - 199
Target Start/End: Original strand, 500356 - 500444
Alignment:
| Q |
111 |
agatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgct |
199 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| ||||| | ||| | ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
500356 |
agatgagcatagagatgatcaacaaaagtgttgcgtgtgtcggaacctctgaaactgataaacacatcatatctatagctttggatgct |
500444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 23 - 208
Target Start/End: Complemental strand, 25484436 - 25484251
Alignment:
| Q |
23 |
ttgaattgcttgtagaagttgcggcgaaagggattctcctttttcaagtcttttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataa |
122 |
Q |
| |
|
||||||||||||||||||||| || |||| || ||||||||| | || |||||||||||||| | ||||||||| || | | |||||||| || |
|
|
| T |
25484436 |
ttgaattgcttgtagaagttggggtgaaatggcttctcctttctgtagctgcttgtcatccttgaaggtgaaaataccttttctattgagatgagcgtag |
25484337 |
T |
|
| Q |
123 |
agatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacacatcatatctatagctttggatgctattggaatc |
208 |
Q |
| |
|
||||| |||||||| | || |||||||||| ||| | ||||||||| |||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
25484336 |
agatggtcaacaaaggaattacgggtgtcagaacctctgaaactgatgaacacatcgtatctatagctttggttgctattagaatc |
25484251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 190
Target Start/End: Complemental strand, 25636626 - 25636510
Alignment:
| Q |
74 |
tttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaac |
173 |
Q |
| |
|
||||||||||||||| | ||||||| || | || ||||||||||| ||||| |||||||| |||||||||||||||| ||| | |||||||||||| |
|
|
| T |
25636626 |
tttgtcatccttgaaggtcgaaataccttttctagtgagatgagcatagagatggtcaacaaaggtgttgcgggtgtcaggacctctgaaactgataaat |
25636527 |
T |
|
| Q |
174 |
acatcatatctatagct |
190 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
25636526 |
acatcatatttatagct |
25636510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 186
Target Start/End: Complemental strand, 25442434 - 25442322
Alignment:
| Q |
74 |
tttgtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaac |
173 |
Q |
| |
|
||||||||||||||| |||||||||| || | || |||||| | || ||||| |||||||| | ||||||||||||| ||| | |||||||| ||| |
|
|
| T |
25442434 |
tttgtcatccttgaagacgaaaataccttttctagtgagatgatcgtagagatggtcaacaaaggaattgcgggtgtcaggacctctaaaactgatgaac |
25442335 |
T |
|
| Q |
174 |
acatcatatctat |
186 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
25442334 |
acatcgtatctat |
25442322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 25478939 - 25479049
Alignment:
| Q |
77 |
gtcatccttgaaagcgaaaatacccttagttgttagatgagcataaagatgatcaacaaaagtgttgcgggtgtcagcaccacggaaactgataaacaca |
176 |
Q |
| |
|
||||||| |||| | ||||||||| || | || ||||||||||| ||||| ||| |||| || || ||||||||| ||| | ||||||||||||||| |
|
|
| T |
25478939 |
gtcatccatgaacgtgaaaataccttttctagtgagatgagcatagagatggtcagcaaaggttttacgggtgtcaatacctctgaaactgataaacacg |
25479038 |
T |
|
| Q |
177 |
tcatatctata |
187 |
Q |
| |
|
|| |||||||| |
|
|
| T |
25479039 |
tcgtatctata |
25479049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University